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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgaatcttaaacatctttacttaagctttttaagtagtgatgatgatgatgatgaaagaatgtttttgtgattgtgatatttgtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAGAGTGTTGAGAGTGAAGTACGCACTAGTTCTGGAATGTTTCTCTCCAAAC

Basic information

species Arabidopsis thaliana
transcript AT3G28480.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86032585|gb|DR328338.1|DR328338
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032582|gb|DR328335.1|DR328335
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032583|gb|DR328336.1|DR328336
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032569|gb|DR328322.1|DR328322
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032587|gb|DR328340.1|DR328340
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|116452355|gb|EG494947.1|EG494947
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032572|gb|DR328325.1|DR328325
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032563|gb|DR328316.1|DR328316
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032580|gb|DR328333.1|DR328333
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032588|gb|DR328341.1|DR328341
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032570|gb|DR328323.1|DR328323
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032575|gb|DR328328.1|DR328328
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032564|gb|DR328317.1|DR328317
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032578|gb|DR328331.1|DR328331
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032568|gb|DR328321.1|DR328321
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032584|gb|DR328337.1|DR328337
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032577|gb|DR328330.1|DR328330
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032576|gb|DR328329.1|DR328329
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032566|gb|DR328319.1|DR328319
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
EST: gi|86032589|gb|DR328342.1|DR328342
EST:     NGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG                         GCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG
genomic: TGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTGgtattgaatc ... gtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgatgatgatgatgaaagaatgtttttgtgattgtgatatttgtttttttagGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAGAGTGTTGAGAGTGAAGTACGCACTAGTTCTGGAATGTTTCTCTCCAAAC
                                          tttgttttttt  CT-rich tract
                                 attgtgatatttgttt  TA-rich tract