Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttgcttttgtgtttgttatctgaaattttgaatctttgtttttgtttatttgatttttttgtgttttttttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG

Basic information

species Arabidopsis thaliana
transcript AT3G28480.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86032585|gb|DR328338.1|DR328338
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032582|gb|DR328335.1|DR328335
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032583|gb|DR328336.1|DR328336
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032569|gb|DR328322.1|DR328322
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCGAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032587|gb|DR328340.1|DR328340
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|116452355|gb|EG494947.1|EG494947
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032572|gb|DR328325.1|DR328325
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032563|gb|DR328316.1|DR328316
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032580|gb|DR328333.1|DR328333
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032588|gb|DR328341.1|DR328341
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032570|gb|DR328323.1|DR328323
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032575|gb|DR328328.1|DR328328
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032564|gb|DR328317.1|DR328317
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032578|gb|DR328331.1|DR328331
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032568|gb|DR328321.1|DR328321
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032584|gb|DR328337.1|DR328337
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032577|gb|DR328330.1|DR328330
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032576|gb|DR328329.1|DR328329
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032573|gb|DR328326.1|DR328326
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032566|gb|DR328319.1|DR328319
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
EST: gi|86032589|gb|DR328342.1|DR328342
EST:     TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG                         AGNNNNNNNGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT
genomic: TCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAGgtttgtttgc ... ttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgaatctttgtttttgtttatttgatttttttgtgttttttttttttgcagAGTTTTTTTGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAATTG
                       atttgat  putative branch site (score: 5)
                        tttgatttttttgtgt  CT-rich tract
          tttgtttttgtttatt  TA-rich tract