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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttctgccttttcctgctgtttgatgcttgattcagatggtaaggcttaaaaccatattctcactttaagatcataactgcagATAAGAGGCATGCACACTCTCATTCGAGAGAAGGACATATCAAAACATGACTTCGTGTTTTACTCAGATCGCCTCATTCGTTTG

Basic information

species Arabidopsis thaliana
transcript AT3G27190.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116474514|gb|EG517106.1|EG517106
EST:     ATCTCTGCAAAATCTACCCAAATGTTTTTGTTATTGAAACAACATTTCAG                         ATAAGAGGCATGCACACTCTCATTCGAGAGAAGGACATATCAAAACATGAC
genomic: ATCTCTGCAAAATCTACCCAAATGTTTTTGTTATTGAAACAACATTTCAGgtaatttctg ... ataactgcagATAAGAGGCATGCACACTCTCATTCGAGAGAAGGACATATCAAAACATGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattcagatggtaaggcttaaaaccatattctcactttaagatcataactgcagATAAGAGGCATGCACACTCTCATTCGAGAGAAGGACATATCAAAACATGACTTCGTGTTTTACTCAGATCGCCTCATTCGTTTG
                                           tcataac  putative branch site (score: 2)
                                    tttaagat  TA-rich tract