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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATATACGAGAAGCTTCCAAGTGATATCTCCGAGCGTCATGTCCTGCTATTAGATCCTGTTTTAGGCACAGgtaatttcagttatttctatttctttttcttctgctttgaagtatatttttttctgaatctttccactttggatgatatcttgaag

Basic information

species Arabidopsis thaliana
transcript AT3G27190.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116474514|gb|EG517106.1|EG517106
EST:     TGATATCTCCGAGCGTCATGTCCTGCTATTAGATCCTGTTTTAGGCACAG                         GTAACTCTGCAAATCAGGCGATAGAACTACTCATACAGAAAGGAGCACCTG
genomic: TGATATCTCCGAGCGTCATGTCCTGCTATTAGATCCTGTTTTAGGCACAGgtaatttcag ... tatcttgaagGTAACTCTGCAAATCAGGCGATAGAACTACTCATACAGAAAGGAGTACCTG
EST: gi|163995113|gb|EL975201.1|EL975201
EST:     TGATATNTCCGAGCGTCATGTCCTGCTATTAGATCCTGTTTTAGGCACAG                         GTAACTCTGCAAATCAGGCGATAGAACTACTCATACAGA
genomic: TGATATCTCCGAGCGTCATGTCCTGCTATTAGATCCTGTTTTAGGCACAGgtaatttcag ... tatcttgaagGTAACTCTGCAAATCAGGCGATAGAACTACTCATACAGA