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gtaatttcagttatttctatttctttttcttctgctttgaagtatatttttttctgaatctttccactttggatgatatcttgaagGTAACTCTGCAAATCAGGCGATAGAACTACTCATACAGAAAGGAGTACCTGAAGCCCACATTATATTCCTCAATCTTATCTCA
species | Arabidopsis thaliana |
transcript | AT3G27190.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGATATCTCCGAGCGTCATGTCCTGCTATTAGATCCTGTTTTAGGCACAG GTAACTCTGCAAATCAGGCGATAGAACTACTCATACAGAAAGGAGCACCTGEST: gi|163995113|gb|EL975201.1|EL975201
genomic: TGATATCTCCGAGCGTCATGTCCTGCTATTAGATCCTGTTTTAGGCACAGgtaatttcag ... tatcttgaagGTAACTCTGCAAATCAGGCGATAGAACTACTCATACAGAAAGGAGTACCTG
EST: TGATATNTCCGAGCGTCATGTCCTGCTATTAGATCCTGTTTTAGGCACAG GTAACTCTGCAAATCAGGCGATAGAACTACTCATACAGA
genomic: TGATATCTCCGAGCGTCATGTCCTGCTATTAGATCCTGTTTTAGGCACAGgtaatttcag ... tatcttgaagGTAACTCTGCAAATCAGGCGATAGAACTACTCATACAGA
ctgctttgaagtatatttttttctgaatctttccactttggatgatatcttgaagGTAACTCTGCAAATCAGGCGATAGAACTACTCATACAGAAAGGAGTACCTGAAGCCCACATTATATTCCTCAATCTTATCTCA
tatatttttttctgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttcagttatttctatttctttttcttctgctttgaagtatatttttttctgaatctttccactttggatgatatcttgaagGTAACTCTGCAAATCAGGCGATAGAACTACTCATACAGAAAGGAGTACCTGAAGCCCACATTATATTCCTCAATCTTATCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC