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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGTGAGACAAATAGATGGCACAAAAATAAGTTATACCGCAAAGCACATATTGATTGCCACTGGCAGTCGGGCGCAAAAGCCTAATATTCCTGGACATgtaagtttctgtgttcatgttattttttttatctactatagtgtgatgtgcttggtatttatgaaatcattatcttcagagtaagtccggaaagatttta...

Basic information

species Arabidopsis thaliana
transcript AT3G24170.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G24170.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA16G27210.1 (Glycine max), 5'ss of exon 6
GGAGGTGAGACAAATAGATGGCACAAAAATAAGTTATACCGCAAAGCACATATTGATTGCCACTGGCAGTCGGGCGCAAAAGCCTAATATTCCTGGACATgtaagttt--ctgtgttcatgttattttttttatctactatagtgtgatg-tgcttggtatttatgaaatcattatcttcagagtaagt-ccggaaagatttta
 ||||||| |||| | |||||||| ||| |    || || |||||||||||||||||||| ||||||||  |||| |||   || |||||||||||||| || | |||  |||| || |  |    ||    |   |   || |   ||| |  ||  | ||| |||    | ||| |     |||  | |    ||||     
TGAGGTGACACAATTGGATGGCACTAAATTGTCCTACACAGCAAAGCACATATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgcctgttttgaaatatcattgcaaaatgatcttacttacatgattgtttctgtttgtgagtataatatttgatatgtacatgctaataagaa----

upper sequence: AT3G24170.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv05s0051g00870.t01 (Vitis vinifera), 5'ss of exon 7
GGAGGTGAGACAAATAGATGGCACAAAAATAAGTTATACCGCAAAGCACATATTGATTGCCACTGGCAGTCGGGCGCAAAAGCCTAATATTCCTGGACATgtaagtttctgtgttcatgttattttttttatctactat--agtgtgatgtgcttgg--tatttatgaaatcattatcttcagagtaagtccggaaagatttta
 ||||||| |||| |||||||||| ||  |  ||||| | |||||||||||||||||||| ||||| ||| |||| |||   || | |||||| || || |||| ||| | || || | ||     | || | |   ||  | | || | | |      |  || |||||| || |  || |||    |     |     |   
TGAGGTGACACAACTAGATGGCACTAAGTTGTGTTATTCAGCAAAGCACATATTGATTGCAACTGGTAGTAGGGCTCAACGTCCAACTATTCCAGGGCAGgtaaattt-tctgatcttctttccaatattgtttgagattgaatatggtatacacaaactggttttgaaattatgagtttaagatcctgatttcagtccat---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116457529|gb|EG500121.1|EG500121
EST:     AGTCGGGCGCAAAAGCCTAATATTCCTGGACAT                         GAGCTGGCTATTACATCTGATGAAGCTTTGAGCTTGGAAGAATTTCCCAAG
genomic: AGTCGGGCGCAAAAGCCTAATATTCCTGGACATgtaagtttct ... tcttttatagGAGCTGGCTATTACATCTGATGAAGCTTTGAGCTTGGAAGAATTTCCCAAG