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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCCTGTGCTGTATTTTGgtaagtattctttctgataggatgaaagtttgctttatttgtgtgtcatattgcaggcactagttacctcaaactatgtgtattgtgtcccggaacaatt...

Basic information

species Arabidopsis thaliana
transcript AT3G24170.2
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164166871|gb|ES040005.1|ES040005
EST:     GCAATGTCGCCTGTGCTGTATTTTG                         CATACCACCACTAGCTGTAGTGGGTCTCAGCGAAGAAGAAGCAGTAGAACA
genomic: GCAATGTCGCCTGTGCTGTATTTTGgtaagtattc ... tgtcttccagCATACCACCACTAGCTGTAGTGGGTCTCAGCGAAGAAGAAGCAGTAGAACA
EST: gi|116457529|gb|EG500121.1|EG500121
EST:     GGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCCTGTGCTGTATTTTG                         CATACCACCACTAGCTGTAGTGGGTCTCAGCGAAGAAGAAGCAGTAGAACA
genomic: GGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCCTGTGCTGTATTTTGgtaagtattc ... tgtcttccagCATACCACCACTAGCTGTAGTGGGTCTCAGCGAAGAAGAAGCAGTAGAACA
EST: gi|116462906|gb|EG505498.1|EG505498
EST:     GGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCCTGTGCTGTATTTTG                         CATACCACCACTAGCTGTAGTGGGTCTCAGCGAAGAAGAAGCAGTAGAACA
genomic: GGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCCTGTGCTGTATTTTGgtaagtattc ... tgtcttccagCATACCACCACTAGCTGTAGTGGGTCTCAGCGAAGAAGAAGCAGTAGAACA
EST: gi|86085355|gb|DR381114.1|DR381114
EST:     AAAGCAGAATACAGCAATGTCGCCTGTGCTGTA-TTTG                         C
genomic: AAAGCAGAATACAGCAATGTCGCCTGTGCTGTATTTTGgtaagtattc ... tgtcttccag-
EST: gi|86085355|gb|DR381114.1|DR381114
EST:     AAAGCAGAATACAGCAATGTCGCCTGTGCTGTA-TTTG                         C
genomic: AAAGCAGAATACAGCAATGTCGCCTGTGCTGTATTTTGgtaagtattc ... tgtcttccag-
EST: gi|116429472|gb|EG472064.1|EG472064
EST:     GGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCCTGTGCTGTATTTTG                         CATACCACCACTAGCTGTAGTGGGTCTCAGCGAAGAAGAAGCAGTAGAACA
genomic: GGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCCTGTGCTGTATTTTGgtaagtattc ... tgtcttccagCATACCACCACTAGCTGTAGTGGGTCTCAGCGAAGAAGAAGCAGTAGAACA
EST: gi|124810719|gb|EH895585.1|EH895585
EST:     GGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCCTGTGCTGTATTTCG                         CATACCACCACTAGCT
genomic: GGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCCTGTGCTGTATTTTGgtaagtattc ... tgtcttccagCATACCACCACTAGCT