1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTATTCACGAACTAATATACCTAGCATATGGGCTGTAGGAGATGCCACAAACCGAATTAACCTTACACCTGTTGCGTTAATGGAGGCCACCTGTTTTGCGgtctgtgcctcttatcttgcacatataatttacacaaacctttcgaggagttgtacctaccaccaactatttcagcttttgtgtttgggaatgtctacttatgtattccatttgtggattgttttgatgcttgcag
species | Arabidopsis thaliana |
transcript | AT3G24170.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ACCGAATTAACCTTACACCTGTTGCGTTAATGGAGGCCACCTGTTTTGCG AACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCCEST: gi|152034638|gb|BP833544.2|BP833544
genomic: ACCGAATTAACCTTACACCTGTTGCGTTAATGGAGGCCACCTGTTTTGCGgtctgtgcct ... atgcttgcagAACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCC
EST: CCGAATTAAACTTACACCTGTTGCGTTAATGGAGGCCACCTGGTTTTGCG AACACTGCTTTGGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCEST: gi|116462906|gb|EG505498.1|EG505498
genomic: CCGAATTAACCTTACACCTGTTGCGTTAATGGAGGCCACCTG-TTTTGCGgtctgtgcct ... atgcttgcagAACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGC
EST: TTAATGGAGGCCACCTGTTTTGCG AACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCCEST: gi|124810719|gb|EH895585.1|EH895585
genomic: TTAATGGAGGCCACCTGTTTTGCGgtctgtgcct ... atgcttgcagAACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCC
EST: AGGCCACCTGTTTTGCG AACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCC
genomic: AGGCCACCTGTTTTGCGgtctgtgcct ... atgcttgcagAACACTGCTTTTGGTGGAAAGCCTACTAAAGCAGAATACAGCAATGTCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTCACGAACTAATATACCTAGCATATGGGCTGTAGGAGATGCCACAAACCGAATTAACCTTACACCTGTTGCGTTAATGGAGGCCACCTGTTTTGCGgtctgtgcctcttatcttgcacatataatttacacaaacctttcgaggagttgtacctaccaccaactatttcagcttttgtgtttgggaatgtctacttatgtattccatttgtggattgttttgatgcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG