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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagttcatttctggttttaatagaaaaagattagagctctaccacttaactgcctagttacttatacaccctttttcacatgtttgaacttgaaaatcagATTGAGGAGAAAAGGATTATTCTTAAGTCATAGGAACATCTGGATTCTATAGGTAAAAG

Basic information

species Arabidopsis thaliana
transcript AT3G23900.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19742430|gb|AU227783.1|AU227783
EST:     CTAGCAGCTCAGTGGAAAGAGGTGATGCAAATGATGATGAGAAGTTTAAG                         ATTGAGGAGAAAAGGATTATTCTTAAGTCATAGGAACATCTGGATTCTATA
genomic: CTAGCAGCTCAGTGGAAAGAGGTGATGCAAATGATGATGAGAAGTTTAAGgtgcggtttt ... tgaaaatcagATTGAGGAGAAAAGGATTATTCTTAAGTCATAGGAACATCTGGATTCTATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaactgcctagttacttatacaccctttttcacatgtttgaacttgaaaatcagATTGAGGAGAAAAGGATTATTCTTAAGTCATAGGAACATCTGGATTCTATAGGTAAAAG
 acttaac  putative branch site (score: 3)
            ttacttata  TA-rich tract