1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtactgtaccttttgttgctagtctctcgatattcatctctattttttctttgggtctcaagttgaatatcattagatatttatttagttttctcgatactcatgagttctactagcttttggtttagGTTCCCCAGAAAAAGGAGAAAACGGGGATTTGAAGAAATTTCTCCAAGTTAGCAACCTAAGTCCATCGCTTACAACTGAACAACTTAGGCAGCTATTTAG
species | Arabidopsis thaliana |
transcript | AT3G23900.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAACAAGGGATCTTTAG GTTCCCCAG-AAAAGGAGAAAACGGGGATTTGAAGAAATTTCTCCAAGTTA
genomic: CAAACAAGGGATCTTTAGgtactgtacc ... tttggtttagGTTCCCCAGAAAAAGGAGAAAACGGGGATTTGAAGAAATTTCTCCAAGTTA
tagatatttatttagttttctcgatactcatgagttctactagcttttggtttagGTTCCCCAGAAAAAGGAGAAAACGGGGATTTGAAGAAATTTCTCCAAGTTAGCAACCTAAGTCCATCGCTTACAACTGAACAACTTAGGCAGCTATTTAG
ctttt CT-rich tract
atttatttagttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtaccttttgttgctagtctctcgatattcatctctattttttctttgggtctcaagttgaatatcattagatatttatttagttttctcgatactcatgagttctactagcttttggtttagGTTCCCCAGAAAAAGGAGAAAACGGGGATTTGAAGAAATTTCTCCAAGTTAGCAACCTAAGTCCATCGCTTACAACTGAACAACTTAGGCAGCTATTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT