1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGGTCCATCCATGGACTTGGTTATCAGGCGTAATCGTCTTCCTAACGATAGCTTAATGAAAGAAGCAATGAGAACATCCAAGGATAAGCCTAAGAAGAAGgtactaaacaacataaaagtctaatatttctcttaaaatcgaaagagacagatgactaatcaatcaatctcttcttctacag
species | Arabidopsis thaliana |
transcript | AT3G23620.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCTTAATGAAAGAAGCAATGAGAACATCCAAGGATAAGCCTAAGAAGAAG GAGAAAAACGTTGATCAAGATGCAGTACTAGGGAAGACTGGGAAGEST: gi|86078246|gb|DR374003.1|DR374003
genomic: GCTTAATGAAAGAAGCAATGAGAACATCCAAGGATAAGCCTAAGAAGAAGgtactaaaca ... tcttctacagGAGAAAAACGTTGATCAAGATGCAGTACTAGGGAAGACTGGGAAG
EST: GCTTAATGAAAGAAGCAATGAGAACATCCAAGGATAAGCCTAAGAAGAAG GAGAAAAACGTTGATCAAGATGCAGTACTAGGGAAGACTGGGAAGATTTATEST: gi|164039127|gb|ES150096.1|ES150096
genomic: GCTTAATGAAAGAAGCAATGAGAACATCCAAGGATAAGCCTAAGAAGAAGgtactaaaca ... tcttctacagGAGAAAAACGTTGATCAAGATGCAGTACTAGGGAAGACTGGGAAGATTTAT
EST: GCTTAATGAAAGAAGCAATGAGAACATCCAAGGATAAGCCTAAGAAGAAG GAGAAAA-CGTTGATCAAGATGCAGT
genomic: GCTTAATGAAAGAAGCAATGAGAACATCCAAGGATAAGCCTAAGAAGAAGgtactaaaca ... tcttctacagGAGAAAAACGTTGATCAAGATGCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTCCATCCATGGACTTGGTTATCAGGCGTAATCGTCTTCCTAACGATAGCTTAATGAAAGAAGCAATGAGAACATCCAAGGATAAGCCTAAGAAGAAGgtactaaacaacataaaagtctaatatttctcttaaaatcgaaagagacagatgactaatcaatcaatctcttcttctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG