Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctgatgttatcacaggccttaagaagtcatttggaaaggtgtattggcaaattaactttgatgcgagttctaacattggtgattgtttttatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATGTATGATCACCAAGTCTATGATCTTATAGAAGTTGGGATTGAGAACTTTA

Basic information

species Arabidopsis thaliana
transcript AT3G23620.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G23620.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA10G07630.1 (Glycine max), 3'ss of exon 2
----gctgatgttatcacaggccttaagaagtcatttggaaaggtgtattggcaaattaactttgatgcgagttctaacattggtgattgtttttatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATGTATGATCACCAAGTCTATGATCTTATAGAAGTTGGGATTGAGAACTTTA
      | |  ||  |  |    || |       | |  |||  |        |||   ||    | | |  || |    |||||| |||| ||    ||||||||||| |||||| ||||||| || ||||| || |||||  |||||||||  |||||||| ||  |||||||| |  | || |||||  |||| || ||||
gctgctttaaatttacttaaaagttgaattcctgtctaaaaatttccccatctaaacacaccactaag-gctttttggttttggtgtttgtatt---gttgcagTATGGATCTCACTCGAAGAAGCGGCCTGATAACCTTGTTATTGGGAGAACTTATGATCATCATATCTATGATTTAGTGGAGGTTGGAGTTGAAAATTTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86042812|gb|DR338567.1|DR338567
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042773|gb|DR338528.1|DR338528
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042802|gb|DR338557.1|DR338557
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042771|gb|DR338526.1|DR338526
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042792|gb|DR338547.1|DR338547
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGANACGRCCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042770|gb|DR338525.1|DR338525
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042775|gb|DR338530.1|DR338530
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042807|gb|DR338562.1|DR338562
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042787|gb|DR338542.1|DR338542
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042810|gb|DR338565.1|DR338565
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042793|gb|DR338548.1|DR338548
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042799|gb|DR338554.1|DR338554
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042774|gb|DR338529.1|DR338529
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042794|gb|DR338549.1|DR338549
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042805|gb|DR338560.1|DR338560
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042795|gb|DR338550.1|DR338550
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042790|gb|DR338545.1|DR338545
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042777|gb|DR338532.1|DR338532
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042788|gb|DR338543.1|DR338543
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042783|gb|DR338538.1|DR338538
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042813|gb|DR338568.1|DR338568
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042809|gb|DR338564.1|DR338564
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTWCTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042772|gb|DR338527.1|DR338527
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042778|gb|DR338533.1|DR338533
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042786|gb|DR338541.1|DR338541
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042769|gb|DR338524.1|DR338524
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042808|gb|DR338563.1|DR338563
EST:     AAANTTCATTAGAGTTCTTCTCTCAGAAAACAAATTGTAGCATTTTTGTG                         TATGGTTCTCACACTGAAGAAACGACCTGACAATCTTGTACTTGGGAGAAT
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACAC-GAAGAAACGACCTGACAATCTTGTACTTGGGAGAAT
EST: gi|86042768|gb|DR338523.1|DR338523
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042784|gb|DR338539.1|DR338539
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042781|gb|DR338536.1|DR338536
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042797|gb|DR338552.1|DR338552
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042800|gb|DR338555.1|DR338555
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042815|gb|DR338570.1|DR338570
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042780|gb|DR338535.1|DR338535
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042801|gb|DR338556.1|DR338556
EST:     AA-CTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAGGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042785|gb|DR338540.1|DR338540
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042804|gb|DR338559.1|DR338559
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042789|gb|DR338544.1|DR338544
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042811|gb|DR338566.1|DR338566
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042796|gb|DR338551.1|DR338551
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042817|gb|DR338572.1|DR338572
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042806|gb|DR338561.1|DR338561
EST:     AAAMTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
EST: gi|86042816|gb|DR338571.1|DR338571
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAASAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGA
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGA
EST: gi|86042791|gb|DR338546.1|DR338546
EST:     AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTG                         TATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG
genomic: AAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGgtaagttcat ... tatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggcaaattaactttgatgcgagttctaacattggtgattgtttttatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATGTATGATCACCAAGTCTATGATCTTATAGAAGTTGGGATTGAGAACTTTA
                       ttctaac  putative branch site (score: 1)
                                      ttgttttt  putative PPT
                                   tgattgtttttatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gctgatgttatcacaggccttaagaagtcatttggaaaggtgtattggcaaattaactttgatgcgagttctaacattggtgattgtttttatattgcagTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATGTATGATCACCAAGTCTATGATCTTATAGAAGTTGGGATTGAGAACTTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - tatcaca
- - - - - - - - - - -aagaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaacat