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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatcctctctccattcacaaatcggaacgactatttttgtttttttttttcttttttgctcactttgttttaccattttcgcttcagCTCCTAAGAGAAAGAAGCCGAGACATGTCAAGTACGAAGACGATAACAGTTCACGCGTCACTACAATCAAATCCGAAGCCGAAGCTCCTTCAAAAAGTCA

Basic information

species Arabidopsis thaliana
transcript AT3G22380.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116466320|gb|EG508912.1|EG508912
EST:     ATCTATCACACTAGCTGCAAATTCTAGCTCCTCTAATGTTTCAGCCATCG                         CTCCTAAGAGAAAGAAGCCGAGACATGTCAAGTACGA
genomic: ATCTATCACACTAGCTGCAAATTCTAGCTCCTCTAATGTTTCAGCCATCGgtaacatcct ... ttcgcttcagCTCCTAAGAGAAAGAAGCCGAGACATGTCAAGTACGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttgtttttttttttcttttttgctcactttgttttaccattttcgcttcagCTCCTAAGAGAAAGAAGCCGAGACATGTCAAGTACGAAGACGATAACAGTTCACGCGTCACTACAATCAAATCCGAAGCCGAAGCTCCTTCAAAAAGTCA
                        tgctcac  putative branch site (score: 2)
       tttttttttttctttt  CT-rich tract
     tgtttttttttttctt  TA-rich tract