Sequence
atgc intronic sequence ATGC exonic sequenceAGATCGTCTCCTTCTCCGGCGCCGGTATCACCTCTTGTCTCGACGTGGAAAGCCGCCGACGAGATGATCGGTGTTTCGGTTCCTAGAAAAGCTCGGTCAGgtagagaggtggaaatttacatttgtaaacatatctctcgctgatctatctcgattcacagttcttctaatctcttcttcgatttttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G22380.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G22380.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os07g38360.2 (Oryza sativa), 5'ss of exon 1
-AGATCGTCTCCTTCTCCGGCGCCGGTATCACCTCTTGTCTCGACGTGGAAAGCCGCCGACGAGATGATCGGTGTTTCGGTTCCTAGAAAAGCTCGGTCAGgtagagaggtggaaatttacatttgtaaacatatctctcgc-tgatctatctcgattcacagttcttctaatctcttcttcgatttttgcag
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CAGATGCAGCGGAAAGGGGGCTCCAATCCGAAGAGCCCCATCG-TATGGAAGGCCGCCGACGAAATGATCGGCGTGCCGGTTCCGAGGAAGGCTCGGTCAGgtatgcgcttggaaaccaccggaaattttggcatctccggtgttcttcgttcttctccatatggctaactcgctccccttgattttcttcag
upper sequence: AT3G22380.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G39490.1 (Glycine max), 5'ss of exon 2
AGATCGTCTCCTTCTCCGGCGCCGGTATCACCTCTTGTCTCGACGTGGAAAGCCGCCGACGAGATGATCGGTGTTTCGGTTCCTAGAAAAGCTCGGTCAGgtagagaggtggaa-atttacatttgtaaacatatctctcgctgatctatctcgattcac-agttcttctaatctcttcttcgatttttgcag
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AGCTTCCCTCCGGCGAAAGTTTTAAGACCAACGCCGCCGACGACGTGGAAGGCCGCCGATGAAATGATCGGAGTATCCGTCCCCAGAAAAGCTCGCTCAGgtaaatcgctcaaccatcgtcaattcacaagacctcactgaattcgctgttctgatgcgctaacttgttttttctttctgtttctctttgcag
upper sequence: AT3G22380.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv05s0020g03150.t01 (Vitis vinifera), 5'ss of exon 2
AGATCGTCTCCTTCTCCGGCGCCGGTATCACCTCTTGTCTCGACGTGGAAAGCCGCCGACGAGATGATCGGTGTTTCGGTTCCTAGAAAAGCTCGGTCAGgtagaga---ggtggaaatttacatttgtaaacatatctctcgctgatctatc--tcgattcacagttct--tctaatctcttcttcgattt---ttgcag
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CGGAAGAGTTATCCACCGGCCAAGGTTGTTAGAGCGCCGCCGGTGTGGAAGGCCGCTGACGAGATGATCGGTGTGTCGGTTCCGAGAAAAGCTCGCTCAGgtggacaatagatggaaagatgaagggttggagattgctttc-ttcttctattgataagttcttgggttgagtctgattttttcatggttttgcatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164221182|gb|ES088280.1|ES088280EST: AGCCGCCGACGAGATGATCGGTGTTTCGGTTCCTAGAAAAGCTCGGTCAG CGTGTACGAAGAGA
genomic: AGCCGCCGACGAGATGATCGGTGTTTCGGTTCCTAGAAAAGCTCGGTCAGgtagagaggt ... atttttgcagCGTGTACGAAGAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATCGTCTCCTTCTCCGGCGCCGGTATCACCTCTTGTCTCGACGTGGAAAGCCGCCGACGAGATGATCGGTGTTTCGGTTCCTAGAAAAGCTCGGTCAGgtagagaggtggaaatttacatttgtaaacatatctctcgctgatctatctcgattcacagttcttctaatctcttcttcgatttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG