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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttgattggatgtgccattctaatatttctctttatatttttttgcctttactgatttaaattttggtcttgtgcagCCTCCACCTCATTTACTTTTTAATCAACCAAGGCCGAAGCGATGTGCTACACACTGCTACATTGCTCGGAATATTCAATCTCATCAGCAATTCACAAAGA

Basic information

species Arabidopsis thaliana
transcript AT3G22380.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116425052|gb|EG467644.1|EG467644
EST:     AAGGAGTTGTGCCTACGGATACCAGTTCCTTATCAGCTGCAGCAATGCAG                         CCTCCACCTCATTTACTTTTTAATCAACCAAGGCCGAAGCGATGTGCTACA
genomic: AAGGAGTTGTGCCTACGGATACCAGTTCCTTATCAGCTGCAGCAATGCAGgtaattttga ... tcttgtgcagCCTCCACCTCATTTACTTTTTAATCAACCAAGGCCGAAGCGATGTGCTACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatttctctttatatttttttgcctttactgatttaaattttggtcttgtgcagCCTCCACCTCATTTACTTTTTAATCAACCAAGGCCGAAGCGATGTGCTACACACTGCTACATTGCTCGGAATATTCAATCTCATCAGCAATTCACAAAGA
                           tactgat  putative branch site (score: 2)
         tttatatttttttgcc  TA-rich tract