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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCGGAAGCGGGATCGAATATGAGATACTTAAGACTAATCCCATTTTGGAAGCATTTGGAAATGCAAAAACATTGAGAAATGATAATTCTAGTCGTTTTgtaagcccttcatcattctgatttttgtatatttttaattatcttatgctaagtcgttgagagttttaggtcttcgtacgtctcacaatgttgttttgatattaaaatatacag

Basic information

species Arabidopsis thaliana
transcript AT3G19960.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G113202_T01 (Zea mays), 5'ss of exon 6
AGGCGGAAGCGGGATCGAATATGAGATACTTAAGACTAATCCCATTTTGGAAGCATTTGGAAATGCAAAAACATTGAGAAATGATAATTCTAGTCGTTTTgtaagcccttcatcattctgatttttgtatatttttaattatcttatgctaagtcgttgagagttttaggtcttcgtacgtctcacaatgttgttttgatattaaaatatacag
||| ||||| || || ||||| || || ||| |||| ||||| ||  | || || ||||| |||||||| ||||||||||||||||| || ||||||||||||||   |   |  |  ||  |  ||  | | || |       ||| |||   | ||||  |    | | |          |||||||                         
AGGTGGAAGTGGCATTGAATACGAAATTCTTCAGACAAATCCAATACTCGAGGCTTTTGGCAATGCAAAGACATTGAGAAATGATAACTCAAGTCGTTTTgtaagttttatttattcttgtgtgatgactgtgttca------ctatactacagctttgaatg----aagaccgatccttattcacaattgcag--------------------

upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G139583_T02 (Zea mays), 5'ss of exon 6
AGGCGGAAGCGGGATCGAATATGAGATACTTAAGACTAATCCCATTTTGGAAGCATTTGGAAATGCAAAAACATTGAGAAATGATAATTCTAGTCGTTTTgtaagcccttcatcattctgatttttgtatatttttaattatcttatgctaagtcgttgagagttttaggtcttcgtacgtctcacaatgttgttttgatattaaaatatacag
||| ||||| || || ||||| || || ||| |||| ||||| ||  | || || ||||| |||||||| ||||||||||||||||| || ||||||||||||||   |   |  |  ||  | ||   |||  |  |   ||  |||  |  ||  |     || |   |    |                                      
AGGTGGAAGTGGCATTGAATACGAAATTCTTCAGACCAATCCAATACTCGAGGCTTTTGGCAATGCAAAGACATTGAGAAATGATAACTCAAGTCGTTTTgtaagttttatttattcgtgtgtgttcactatactacagcttcgaatga-agatcaatctttattctcaattgcag--------------------------------------

upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA20G00320.1 (Glycine max), 5'ss of exon 7
AGGCGGAAGCGGGATCGAATATGAGATACTTAAGACTAATCCCATTTTGGAAGCATTTGGAAATGCAAAAACATTGAGAAATGATAATTCTAGTCGTTTTgtaagcccttcatcattctgatttttgtatatttttaattatc-ttatgctaagtcgttgagagttttaggtcttcgtacgtctcacaatgttgttttgatattaaaatatacag
 || ||||| || || || ||||||||  | ||||||||||| ||  | ||||| ||||| ||||||||||||||||||||||| || || ||||||||||||||        | || ||||  |   ||  ||| ||||  | || |  | | | | ||  |  ||       |   | ||| || ||  | |||   ||||            
CGGTGGAAGTGGAATAGAGTATGAGATTTTAAAGACTAATCCAATACTAGAAGCCTTTGGCAATGCAAAAACATTGAGAAATGACAACTCAAGTCGTTTTgtaagattcctgac-ttgtgatgcta--attctttaaattgccattcttgtgaattgctgctacattcccccactttca-gtcacagaa-atagttgatatatgt----------

upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA09G42180.1 (Glycine max), 5'ss of exon 5
AGGCGGAAGCGGGATCGAATATGAGATACTTAAGACTAATCCCATTTTGGAAGCATTTGGAAATGCAAAAACATTGAGAAATGATAATTCTAGTCGTTTTgtaagcccttcatcattctgatttttgtatatttttaattatc-ttatgctaagtcgttgagagttttaggtcttcgtacgtctcacaatgttgttttgatattaaaatatacag
 || ||||| || || || ||||||||  | ||||||||||| ||  | ||||| ||||| ||||||||||||||||||||||| || || ||||||||||||||        |||  ||||  |   ||  ||| ||||  | || |  | | | | ||  |  ||       |   |        ||| || | |  || |            
TGGTGGAAGTGGAATAGAGTATGAGATTTTAAAGACTAATCCAATACTAGAAGCCTTTGGTAATGCAAAAACATTGAGAAATGACAACTCAAGTCGTTTTgtaagattcctgacatg-tgatgcta--attctttaaattgccattcttgtgaattgctgctacattcccccactttcagtcacagaaatattttatatatgt------------

upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G43230.1 (Glycine max), 5'ss of exon 6
AGGCGGAAGCGGGATCGAATATGAGATACTTAAGACTAATCCCATTTTGGAAGCATTTGGAAATGCAAAAACATTGAGAAATGATAATTCTAGTCGTTTTgtaagcccttcatcattctgatttttgtatatttttaattatcttatgctaagtcgtt-gagagttttaggtcttcgtacgtctcacaatgttgttttgatattaaaatatacag
 || ||||| || || ||  |||||||| | ||||||||||| ||  | ||||| ||||| |||| ||||||||| |||||||| || || ||||||||||||||   | |  ||||          |||  | ||  || | ||| | | | || || | ||  ||| |||  |   |  ||||| ||| ||| ||  || ||| |        
TGGTGGAAGTGGAATAGAGAATGAGATATTAAAGACTAATCCAATACTAGAAGCCTTTGGTAATGGAAAAACATTAAGAAATGACAACTCAAGTCGTTTTgtaagatttcc--catt----------tatcctattggttctttta-gttgattcattagggaacttttggtgctgaaatctctcataat-ttgattgaatgttacag-------

upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA20G23660.1 (Glycine max), 5'ss of exon 7
AGGCGGAAGCGGGATCGAATATGAGATACTTAAGACTAATCCCATTTTGGAAGCATTTGGAAATGCAAAAACATTGAGAAATGATAATTCTAGTCGTTTTgtaagcccttcatcattctgatttttgtatatttttaattatcttatgctaagtcgtt-gagagttttaggtcttcgtacgtctcacaatgttgttttgatattaaaatatacag
 || ||||| || || ||  |||||||| | ||||||||||| ||  | ||||| ||||| |||| ||||||||| |||||||| || || ||||||||||||||   | |  ||||          |||  | || ||| | ||| | | | || || | ||  ||| |||  |   |  ||||| ||| ||| ||  || ||| |        
TGGTGGAAGTGGAATAGAGAATGAGATATTAAAGACTAATCCGATACTAGAAGCCTTTGGTAATGGAAAAACATTAAGAAATGACAACTCAAGTCGTTTTgtaagatttcc--catt----------tatcatattgattctttta-gttgattcattagggaacttttggtgctgaaa--tctcataat-ttgattgaatgttacag-------

upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 6
AGGCGGAAGCGGGATCGAATATGAGATACTTAAGACTAATCCCATTTTGGAAGCATTTGGAAATGCAAAAACATTGAGAAATGATAATTCTAGTCGTTTTgtaagcc----------cttcatcattctgatttttgtatatttttaattatcttatgctaagtcgttgagagttttaggtcttcgtacgtctcacaatgttgt-tttgatattaaaatatacag-----------------------------------------------------------
 ||||| ||||| || |||||||||||| | || || ||||| || ||||| || ||||| |||||||||||||  |||||||| || || ||||| |||||||||            ||||  |  ||||||| |   ||| || ||   |  |||| | |    |||  |     |  ||||   | |  | | | | |||| ||| ||  |       |  |                                                           
TGGCGGTAGCGGAATAGAATATGAGATATTGAAAACAAATCCTATCTTGGAGGCCTTTGGTAATGCAAAAACATCCAGAAATGACAACTCAAGTCGCTTTgtaagctacattttctttttcaatagcctgatttatccttatgtt-aacagttctatgttgaag-attggcaccagcaattcttttca-gaattaaagttttgtgttttatgcttttccccagtggtagtatttttttttgataggaagtggtagtattagtaatctaagtgaacatttttcag

upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: PP1S17_368V6.1 (Physcomitrella patens), 5'ss of exon 6
AGGCGGAAGCGGGATCGAATATGAGATACTTAAGACTAATCCCATTTTGGAAGCATTTGGAAATGCAAAAACATTGAGAAATGATAATTCTAGTCGTTTTgtaagcccttcatcattctgatttttgtatatttttaattatcttatgctaagtcgttgagagttttaggtcttcgtacgtctcaca-atgttgttttgatattaaaatatacag
||||||  | ||| | ||  | ||||| ||  | || ||||| ||||| ||||||||||| || || || |||||||||||||| ||||| ||||| |||||||    | | | | | |||||| |    |||  | || || |||||   | || |    | |||||       | |  |||   | ||| || |  |  |     |       
AGGCGGTGGTGGGTTAGAGGACGAGATCCTGCAAACAAATCCTATTTTAGAAGCATTTGGCAACGCCAAGACATTGAGAAATGACAATTCCAGTCGCTTTgtaa--tttgccttact-tgatttattgtcattcatgatgat-ttatggataatcat----atttttattcacaggcagatcttgtagatgatggtgggtcacgggca-------

upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: EFJ23280 (Selaginella moellendorffii), 5'ss of exon 5
AGGCGGAAGCGGGATCGAATATGAGATACTTAAGACTAATCCCATTTTGGAAGCATTTGGAAATGCAAAAACATTGAGAAATGATAATTCTAGTCGTTTTgtaagcccttcatcattctgatttttgtatatttttaattatcttatgctaagtcgttgagagttttaggtcttcgtacgtctcacaatgttgttttgatattaaaatatacag
||| ||| | ||  | ||| |||| |||||  | |||||||| ||||||||||| ||||| |||||||| ||| |  | ||| | ||||||||||||||||| ||       | |     | ||||  |   |||||| |   || ||  || | |||| |                                                     
AGGTGGAGGAGGTGTGGAAAATGAAATACTGGAAACTAATCCGATTTTGGAAGCTTTTGGGAATGCAAAGACACTTCGCAATAACAATTCTAGTCGTTTTgtgag-------tgagcgaaaattttacactattttaactga-ttctgtcaa-ttgttgtgcag--------------------------------------------------