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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaccaaattttgccatgcttacgctatgaaagaaaaagccaatatatcatcctctatgatatttgattattaatgaccttacctggattttttttccagAGTCAACTCTTCCAATTGATGCAACGTTTAGGAAACACTACCCCACATTTCATTCGCTGTATCAAGCCAAATAACATCCAGTCTCCCGGGGTGTATGAGC

Basic information

species Arabidopsis thaliana
transcript AT3G19960.2
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G19960.1 (Arabidopsis thaliana), 3'ss of exon 18
lower sequence: GLYMA10G43230.1 (Glycine max), 3'ss of exon 16
ttaccaaattttgccatgcttacgctatgaaagaaaaagccaatatatcatcctctatgatatttgattattaatgaccttacctgg-atttttttt-----ccagAGTCAACTCTTCCAATTGATGCAACGTTTAGGAAACACTACCCCACATTTCATTCGCTGTATCAAGCCAAATAACATCCAGTCTCCCGGGGTGTATGAGC
  | ||||  ||   ||  | | |   |      | | |     |  |      ||    ||| |   | | |||||  |||   |  |||| | ||     |||| | ||| | ||||||||||||||||||||||  |  ||||| |||||||| || ||||| || ||||| |||||| |||| || || ||    |||||||
-aaacaaagcttaa-atattcaggggttattttgataggttgggacttaggttact----tatcttgctttaaatgattttataagttatttctgttggcacccagGGACAATTGTTCCAATTGATGCAACGTTTAGAGAGTACTACACCACATTTTATACGCTGCATTAAGCCCAATAACCTCCAATCACCTGGATCATATGAGC

upper sequence: AT3G19960.1 (Arabidopsis thaliana), 3'ss of exon 18
lower sequence: GLYMA20G23660.1 (Glycine max), 3'ss of exon 18
--ttaccaaatt--ttgccatgcttacgctatgaaagaaa-aagccaatatatcatcctctatgatatttgattattaatgaccttacctggattttttttccagAGTCAACTCTTCCAATTGATGCAACGTTTAGGAAACACTACCCCACATTTCATTCGCTGTATCAAGCCAAATAACATCCAGTCTCCCGGGGTGTATGAGC
   |||||||     |   ||  | | |   | |     | | |     |||     || |    || |||||| |||       |  |||   ||     |||| | ||| | ||||||||||||||||||||||  |  ||||| |||||||| || || || |||||||| |||||  |||| || || ||    |||||||
tcctaccaaacaaacttaaatattcagggggttattttgataggttgggatacttatct-tgctttaattgatt-ttataagttatttctg---ttggcacccagGGACAATTGTTCCAATTGATGCAACGTTTAGAGAGTACTACACCACATTTTATCCGATGCATCAAGCCCAATAATCTCCAATCACCTGGATCATATGAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcatcctctatgatatttgattattaatgaccttacctggattttttttccagAGTCAACTCTTCCAATTGATGCAACGTTTAGGAAACACTACCCCACATTTCATTCGCTGTATCAAGCCAAATAACATCCAGTCTCCCGGGGTGTATGAGC
                                           ttttttttcc  CT-rich tract
        tctatgatatttgatt  TA-rich tract