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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCTTGATGGAGTGGACGATCTTATGCAGCTTAGTTACTTAAATGAGCCATCAGTGTTGTACAACCTCAACTATAGGTACAACCAAGACATGATATATgtaagtcttttgttgtgatatttttttttgctcatcaggataatagtctttcccctgaatctgttactatatatgttccagcatctactcttgcttggctaacctttttcctttatggtgctag

Basic information

species Arabidopsis thaliana
transcript AT3G19960.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os10g34710.1 (Oryza sativa), 5'ss of exon 3
TATTCTTGATGGAGTGGACGATCTTATGCAGCTTAGTTACTTAAATGAGCCATCAGTGTTGTACAACCTCAACTATAGGTACAACCAAGACATGATATATgtaagtcttttgttgtgatatttttttttgctcatcaggataatagtctttcccctgaatctgttactatat-atgttccagcatctactcttgcttggctaacctttttcctttatggtgctag
 |||||||| || ||||| |||||||||||||| |||||  ||| ||||||||| ||  |||||||  |  | || || |||   |||||| |||||||||||||  |     ||  |  | |||| |   | ||  ||  | |  | |  |   |  |  || ||||||||  |  |  ||                                           
AATTCTTGACGGGGTGGATGATCTTATGCAGCTAAGTTATCTAAGTGAGCCATCCGTTCTGTACAATTTGCAGTACAGATACTCTCAAGACTTGATATATgtaaggataaatctg-aacttcttttctcctttatttggg-agttctatggcttttatag-tgatactatattgtactgtag-------------------------------------------

upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G113202_T01 (Zea mays), 5'ss of exon 3
TATTCTTGATGGAGTGGACGATCTTATGCAGCTTAGTTACTTAAATGAGCCATCAGTGTTGTACAACCTCAACTATAGGTACAACCAAGACATGATATATgtaagtcttttgttgtgatatttttttttgctcatcaggataatagtctttcccctga-atctgttactatatatgttccagcatctactcttgcttggctaacctttttcctttatggtgctag
 ||||||||||||||||| |||||||||||||| |||||  ||| ||| ||||||||  ||||||| ||  | || || |||  | | || ||||| ||||||||   |  | ||| |  ||||||||||    |     |||| |  ||     ||| || | |     | ||                                                   
AATTCTTGATGGAGTGGATGATCTTATGCAGCTAAGTTATCTAAGTGAACCATCAGTACTGTACAATCTGCAGTACAGATACTCCAAGGATATGATTTATgtaagaagt--gatgtaaactttttttttga--gttcaattaatggctttattattgatatttatcgtactgtag--------------------------------------------------

upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G139583_T02 (Zea mays), 5'ss of exon 3
TATTCTTGATGGAGTGGACGATCTTATGCAGCTTAGTTACTTAAATGAGCCATCAGTGTTGTACAACCTCAACTATAGGTACAACCAAGACATGATATATgtaagtcttttgttgtgatatttttttttgctcatcaggataatagtctttcccctgaatctgttactatatatgttccagcatctactcttgcttggctaacctttttcctttatggtgctag
 ||||||||||||||||| || ||||||||||| |||||  ||| ||| ||||||||| ||||||| ||  | || || |||  ||| |||||||| ||||||||   |  | ||||| | ||||| ||  | ||  |||    | |   |  | | |   | ||  ||| |||  | | | |                                         
AATTCTTGATGGAGTGGATGACCTTATGCAGCTAAGTTATCTAAGTGAACCATCAGTGCTGTACAATCTGCAGTACAGATACTCCCAGGACATGATTTATgtaagaagt--gatgtga-actttttattttttat--ggaattcaattaatggcttta--ttattgatatttatcgtactgtag----------------------------------------

upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G00320.1 (Glycine max), 5'ss of exon 4
TATTCTTGATGGAGTGGACGATCTTATGCAGCTTAGTTACTTAAATGAGCCATCAGTGTTGTACAACCTCAACTATAGGTACAACCAAGACATGATATATgtaagtcttt---tgttgtgatatttttttttgctcatcaggataatagtctttcccctgaatctgttactatatatgttccagcatctactcttgcttggctaacctttttcctttatggtgctag
||| |||||||||||||| || || ||||| |||||||| ||||||||||| ||||| || | ||||||  | ||||| ||||| ||| ||||||| |||||||||||||   | |  | | |  |||| |     ||  |  |  |  || |  |    ||| | ||  ||| | | |  |    |  | |   |                               
TATCCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTAAATGAGCCGTCAGTTTTATTCAACCTGCAATATAGATACAATCAAAACATGATTTATgtaagtctttatgtctctttaaaaattttctcatcaatttgtttcttgatcataacttctaatgtatt--tatgtgtataactatgtacaattcag-------------------------------

upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G23660.1 (Glycine max), 5'ss of exon 4
TATTCTTGATGGAGTGGACGATCTTATGCAGCTTAGTTACTTAAATGAGCCATCAGTGTTGTACAACCTCAACTATAGGTACAACCAAGACATGATATATgtaagtcttt-tgttg-tgatatttttttttgctcatcaggataatagtcttt---cccctgaatctgttactatatatgttccagcatctactcttgcttggctaacctttttcctttatggtgctag
|||||||||||||||||| || || ||||| || ||||| |||||||||||||| || || | ||||||  | ||||| ||||| ||  | ||||| ||||||||||||| | | | | |  ||||| | | |  ||  |  |  || || |     |  | | |   | ||| |||    | |||                                           
TATTCTTGATGGAGTGGATGACCTCATGCAACTAAGTTATTTAAATGAGCCATCGGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATgtaagtctttatatcgcttaagtttttctcttcaaatttgtttcctaatcataacatctttaattacataactgtattcaattcag-------------------------------------------

upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G42180.1 (Glycine max), 5'ss of exon 2
TATTCTTGATGGAGTGGACGATCTTATGCAGCTTAGTTACTTAAATGAGCCATCAGTGTTGTACAACCTCAACTATAGGTACAACCAAGACATGATATATgtaagtcttt---tgttgtgatatttttttttgctcatcaggataatagtctttcccctgaatctgttactatatatgttccagcatctactcttgcttggctaacctttttcctttatggtgctag
||| |||||||| ||||| || || ||||| |||||||| |||||||| || ||||| || ||||||||    ||||| ||||| ||| ||||||| |||||||||||||   | |  | | | ||||| |     || ||  |  |  || |  |  ||||| | ||  ||| | | |  |    |  | |   |                               
TATCCTTGATGGGGTGGATGACCTCATGCAACTTAGTTATTTAAATGAACCGTCAGTTTTATACAACCTGCGATATAGATACAATCAAAACATGATTTATgtaagtctttatgtctctttaaagtttttctcatcaattagtttcttgatcataactttgaatgtatt--tatgtgtataactatgtacaattcag-------------------------------

upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G43230.1 (Glycine max), 5'ss of exon 3
TATTCTTGATGGAGTGGACGATCTTATGCAGCTTAGTTACTTAAATGAGCCATCAGTGTTGTACAACCTCAACTATAGGTACAACCAAGACATGATATATgtaagtcttttgttgtgatatttttttttgctcatcaggataatagtctttcccctgaatctgttactatatatgttccagcatctactcttgcttggctaacctttttcctttatggtgctag
|||||||||||| ||||| || || ||||| || ||||| ||||| || |||||||| || | ||||||  | ||||| ||||| ||  | ||||| |||||||||||||     |   | |||  |||     | |    |||  | |||||     ||    |||| | |    | |||                                           
TATTCTTGATGGGGTGGATGACCTCATGCAACTAAGTTATTTAAACGAACCATCAGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATgtaagtcttt----atatcactttagtttttctctta----aattttgtttcctaatcataacatactgtgttcaattcag-------------------------------------------

upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 3
TATTCTTGATGGAGTGGACGATCTTATGCAGCTTAGTTACTTAAATGAGCCATCAGTGTTGTACAACCTCAACTATAGGTACAACCAAGACATGATATATgtaagtcttttgttgtgatatttttttttgctcatcaggataatagtctttcccctgaatctgttactatatatgttccagcatctactcttgcttggctaacctttttcctttatggtgctag
||| ||||| || || || || |||||||| ||||||||||||||||||||||| ||||||||||| ||  |  |||| ||||| ||||| ||||| ||||||||| |||  ||      || || |   |  ||     |  || | |    |   ||| ||  | | | | |  |   |  | || |  || |  ||    ||| |    || | ||     
TATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGGTGTTGTACAATCTTCAACATAGATACAATCAAGATATGATTTATgtaagtgtttattt------ttcttctaaacatatt----ttttaatttgcttctgaaatgtgccagtttctctaat---gtttttattggtggtgtgcc--tcttatatgcttgttgtag---