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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATATATCCAGGATGGCATTGACTGGACAAGGGTTGATTTTGAGGACAACCAAAATTGTCTGAGTCTTTTTGAAAAGgtatataatcagaaaacaatagactaggaagcgatatggataacctaattagaagatatagagtttaactattacacactataaaaccgtagttaattggtgaaatgcttactttagtcaaacatttattttaaggcacttacgtctgttgtctgtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G19960.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: LOC_Os10g34710.1 (Oryza sativa), 5'ss of exon 15
GAATATATCCAGGATGGCATTGACTGGACAAGGGTTGATTTTGAGGACAACCAAAATTGTCTGAGTCTTTTTGAAAAGgtatataatcagaaaacaatagactaggaagcgatatggataacctaattagaagatatagagt-ttaactattacacactataaaaccgtagttaattggtgaaatgcttactttagtcaaacatttattttaaggcacttacgtctgttgtctgtgcag
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GAATACGTTGAAGATGGCATTGACTGGGCAAAGGTTGAGTTTGAGGACAATCAGAACTGTTTGAATCTCTTTGAGAAAgtatgggcc---actacatcttgcctgctacttatat---ttatcta--tagagagtactgtgcattcattgtttagtagcactgcattaaagtttactacctaagtt-----------------------------------------------------

upper sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 15
GAATATATCCAGGATGGCATTGACTGGACAAGGGTTGATTTTGAGGACAACCAAAATTGTCTGAGTCTTTTTGAAAAGgtatataatcagaaaacaatagactaggaagcgatatggataacctaat-tagaagatatagagtttaactattacacactataaaaccgtagttaattggtgaaatgcttactttagtcaaacatttattttaaggcacttacgtctgttgtctgtgcag
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GAATATATCCAAGATGGAATTGACTGGAATAGAGTTGATTTTGAGGACAATCAAGACTGTCTAAATCTTTTTGAGAAGgta------caaaggtcattgatgtgtccatttatgcacactacatcatattgcttctgtattatcttactgattagaactattgcagctaaacaaaccta-gaggc------------------------------------------------------