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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTTTACAGCAGCTAAGATGTTGTGGGGTCCTAGAAGTGGTTCGAATTTCACGGTCTGGATTTCCTACAAGAATGTCTCATCAGAAATTTTCCCGAAGgtgacaatgccattcatcattagtagttgtgcaagggaccgtacaagcgtttcttcataagttttaatcacattgatcatattgcag

Basic information

species Arabidopsis thaliana
transcript AT3G19960.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G19960.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: LOC_Os10g34710.1 (Oryza sativa), 5'ss of exon 18
TTGTTTTACAGCAGCTAAGATGTTGTGGGGTCCTAGAAGTGGTTCGAATTTCACGGTCTGGATTTCCTACAAGAATGTCTCATCAGAAATTTTCCCGAAGgtgacaatgccattcatcattagtagttgtgcaagggaccgtacaagcgtttcttcataagttttaatcacattgatcatattgcag
||||  | || || || | |||||||||||| || || || || ||||||||| | ||||||| ||| ||||||||| |||||||||||||| | ||| ||| |  |    |||    |  ||||||  ||||     |     |    ||  ||   ||   |  | ||  || ||  |||     
TTGTGCTTCAACAACTCAAATGTTGTGGGGTTCTTGAGGTTGTCCGAATTTCAAGATCTGGATATCCAACAAGAATGACTCATCAGAAATTTGCTCGACGgtaaataaaatatttg--aacagtagtattgcattt--ctagttaccttttattttgcaatactgtaaca-gttcattttatcag--

upper sequence: AT3G19960.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA20G00320.1 (Glycine max), 5'ss of exon 19
TTGTTTTACAGCAGCTAAGATGTTGTGGGGTCCTAGAAGTGGTTCGAATTTCACGGTCTGGATTTCCTACAAGAATGTCTCATCAGAAATTTTCCCGAAGgt-----gacaatgccattcatcattagtagttgtgcaagggaccgtacaagcgtttcttcataagttttaatcacattgatcatattgcag---------------------------------
|||| || || ||||| ||||| ||||||||||| ||||| |||||||| ||  | || || ||||| |||||||||||||| || |||||| || ||||||     ||||     | | || |||  ||    | |||        ||   |     | | |  |   |  |    |||    | |   |                                  
TTGTATTGCAACAGCTGAGATGCTGTGGGGTCCTGGAAGTAGTTCGAATATCGAGATCAGGCTTTCCAACAAGAATGTCTCACCAAAAATTTGCCAGAAGgtataacgacagaaagactgataatttatatcctttcaaatactatcaccttccacattccctccgccctggtgtttttgcatgtgtctaaccttgttcttattggcttgggtgcattgaatcag

upper sequence: AT3G19960.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA10G43230.1 (Glycine max), 5'ss of exon 17
TTGTTTTACAGCAGCTAAGATGTTGTGGGGTCCTAGAAGTGGTTCGAATTTCACGGTCTGGATTTCCTACAAGAATGTCTCATCAGAAATTTTCCCGAAGgtg-----acaatgccattc--atcattagtagttgtgcaaggga----ccgtacaagcgtttcttcataagttttaatcacattgatcatattgcag--------------
||||  | |||||| | ||||||||||||||||| ||||||||||| || ||| | || || |||||||| ||| ||||||| || || ||| || ||||||      |||| |  | |    | |||  ||    | |||   |    || | | || |||| ||      || |||      || |  |  |   |              
TTGTACTGCAGCAGTTGAGATGTTGTGGGGTCCTGGAAGTGGTTCGGATATCAAGATCGGGCTTTCCTACTAGAGTGTCTCACCAAAAGTTTGCCAGAAGgtagaacaacaaagaaactatggtgattgatatcctttcaaattagtccccatcctagtgttttttgcacgtttctaacttttctgttattgatttgggagcggtgaatcag

upper sequence: AT3G19960.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA09G42180.1 (Glycine max), 5'ss of exon 17
TTGTTTTACAGCAGCTAAGATGTTGTGGGGTCCTAGAAGTGGTTCGAATTTCACGGTCTGGATTTCCTACAAGAATGTCTCATCAGAAATTTTCCCGAAGgtgacaatgcca-----ttcatcattagtagttgtgcaaggg-----accgtacaagcgtttcttcataagttttaatcacattgatcatattgcag-----------------------------
|||| || |||||||| ||||| ||||||||||| ||||| |||||||| ||  | ||||| ||||| |||||||||| ||| || || ||| |  |||||| | |||  ||      | || |||  ||    | |||        ||| | ||      |  |     | | |  | ||||   || |||    |                             
TTGTATTGCAGCAGCTGAGATGCTGTGGGGTCCTGGAAGTAGTTCGAATATCGAGATCTGGCTTTCCAACAAGAATGTTTCACCAAAAGTTTGCTAGAAGgt-ataataacagaaaactgatgatttatatcctttcaaatactatcaccttccacattccttctgccctggtgtttttacatgtgtc-tatccttgttcttattggcttgggtgtgttgaatcag

upper sequence: AT3G19960.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA20G23660.1 (Glycine max), 5'ss of exon 19
TTGTTTTACAGCAGCTAAGATGTTGTGGGGTCCTAGAAGTGGTTCGAATTTCACGGTCTGGATTTCCTACAAGAATGTCTCATCAGAAATTTTCCCGAAGgt-----------gacaatgccattcatcattagtagttgtgcaagggacc-------gtacaagcgtttcttcataagttttaatcacattgatcatattgcag--------------------------
||||  | |||||| | ||||||||||||||||| ||||||||||| || ||| | || || |||||||| ||| | ||||| || || ||| || ||||||           || |    |  |  | |||  ||    | |||   |||          | | |   | | |    | |||   ||||||  | |  || | |                          
TTGTACTGCAGCAGTTGAGATGTTGTGGGGTCCTGGAAGTGGTTCGGATATCAAGATCGGGCTTTCCTACTAGAGTATCTCACCAAAAGTTTGCCAGAAGgtataacaacagagaaagaaactatggtgattgatatcctttcaaattacccccccgtcccctatcccctatccccgtgctttttgcacatttctaacctttctgttattgacttgggagtggtaaatcag

upper sequence: AT3G19960.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 18
TTGTTTTACAGCAGCTAAGATGTTGTGGGGTCCTAGAAGTGGTTCGAATTTCACGGTCTGGATTTCCTACAAGAATGTCTCATCAGAAATTTTCCCGAAGgtg-aca---atgcca----ttcatcat-tagtagttgtgca---agggaccgtacaagcgtttcttcataa---gttttaatcacattgatcatattgcag----------------------
||||  | ||||| |||||||||||||| ||||||||||| ||| |||| ||  |||| || ||||| ||  | |||||||||||||| ||| |  ||||||  |||   ||| ||    || || || |||| ||  ||||   |   |   |  |  | |||||| | ||   ||||| ||   |||  | || || |                        
TTGTACTGCAGCAACTAAGATGTTGTGGAGTCCTAGAAGTAGTTAGAATATCGAGGTCGGGCTTTCCAACTCGGATGTCTCATCAGAAGTTTGCTAGAAGgtacacatagatgacaaggttttattatctagttgtattgcacttataaattttgtattcttttcttaagaatctgtttttattttatt--ttattttcccttgtttggttgttaattgaccag