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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCTACCGATAAATGCATAATGGGGTTCCTGTTTCTCATTGTATGCGGTGTAGTAGCCATAATCATAGTGAAGgtactgtcttttctctctctgttgaaagttgtgattgctcattagcaagttgtaactctggtttttgtattaattcttcag

Basic information

species Arabidopsis thaliana
transcript AT3G17440.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G17440.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv05s0020g00750.t01 (Vitis vinifera), 5'ss of exon 9
GTGGCTACCGATAAATGCATAATGGGGTTCCTGTTTCTCATTGTATGCGGTGTAGTAGCCATAATCATAGTGAAGgtactgtcttttctctctctgttgaaagttgtga--ttgctcattagcaagttg--taactctggtttttgtattaattcttcag------------------
|||||||| |||||||||||||||   ||||| ||||| ||||| || |||||| ||||||| ||||| |||||||||   | | ||||||| |  ||   | || |||  |||  | || ||||  ||  ||||||   |  ||  ||| |   |  ||                  
GTGGCTACGGATAAATGCATAATGCTTTTCCTATTTCTTATTGTGTGTGGTGTAATAGCCATTATCATTGTGAAGgta---tgtattctctcgcgtttatcatttatgaccttgaacttttgcaacgtgcttaactcacctgctttaattgaacttaaaggtgaaatgaaccccaaac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124919457|gb|EH993217.1|EH993217
EST:     TGCGGTGTAGTAGCCATAATCATAGTGAAG                         ATCGTGAATCCGAATAACAAAGACATTAGGGACATCCCAGGATTAGCTCCT
genomic: TGCGGTGTAGTAGCCATAATCATAGTGAAGgtactgtctt ... aattcttcagATCGTGAATCCGAATAACAAAGACATTAGGGACATCCCAGGATTAGCTCCT
EST: gi|125231481|gb|EL245566.1|EL245566
EST:     GGTTCCTGTTTCTCATTGTATGCGGTGTAGTAGCCATAATCATAGTGAAG                         ATCGTGAATCCGAATAACAAA
genomic: GGTTCCTGTTTCTCATTGTATGCGGTGTAGTAGCCATAATCATAGTGAAGgtactgtctt ... aattcttcagATCGTGAATCCGAATAACAAA