1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatgcaaattattctcctttacttccatattaatcttatgagtagagtcttaaacaacctgaaaattttgcagACGGATCAAATGGGACGCGTAGTTAACCACTTGGACACTATTCAATTCTCAATCAAGAAGGCCTCCCAGCTGGTGAAAGAGATAGGGAGACAGGTGT
species | Arabidopsis thaliana |
transcript | AT3G17440.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGCTAATTTAAAGGGACAG ACGGATCAAATGGGACGCGTAGTTAACCACTTGGACACTATTCAATTCTCAEST: gi|125293409|gb|EL307494.1|EL307494
genomic: AGCTAATTTAAAGGGACAGgtaatgcaaa ... aattttgcagACGGATCAAATGGGACGCGTAGTTAACCACTTGGACACTATTCAATTCTCA
EST: CTCGAAGTTGGAACTCAAACTGCAGCTAATTTAAAGGGACAG ACGGATCAAATGGGACGCGTAGTTAACCAEST: gi|124939457|gb|EL015995.1|EL015995
genomic: CTCGAAGTTGGAACTCAAACTGCAGCTAATTTAAAGGGACAGgtaatgcaaa ... aattttgcagACGGATCAAATGGGACGCGTAGTTAACCA
EST: AACAAACACTCGAAGTTGGAACTCAAACTGCAGCTAATTTAAAGGGACAG ACGGATCAAATGGGACGCGTAGTTAACCACTTGGACACTATTCAATTCTC
genomic: AACAAACACTCGAAGTTGGAACTCAAACTGCAGCTAATTTAAAGGGACAGgtaatgcaaa ... aattttgcagACGGATCAAATGGGACGCGTAGTTAACCACTTGGACACTATTCAATTCTC
ttacttccatattaatcttatgagtagagtcttaaacaacctgaaaattttgcagACGGATCAAATGGGACGCGTAGTTAACCACTTGGACACTATTCAATTCTCAATCAAGAAGGCCTCCCAGCTGGTGAAAGAGATAGGGAGACAGGTGT
tattaat putative branch site (score: 2)
atattaatcttatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgcaaattattctcctttacttccatattaatcttatgagtagagtcttaaacaacctgaaaattttgcagACGGATCAAATGGGACGCGTAGTTAACCACTTGGACACTATTCAATTCTCAATCAAGAAGGCCTCCCAGCTGGTGAAAGAGATAGGGAGACAGGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA