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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtcttttctctctctgttgaaagttgtgattgctcattagcaagttgtaactctggtttttgtattaattcttcagATCGTGAATCCGAATAACAAAGACATTAGGGACATCCCAGGATTAGCTCCTCCAGCGCAATCGAGGAAGCTATTGTACTTGAGGAATCAAGACTACATGT

Basic information

species Arabidopsis thaliana
transcript AT3G17440.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124919457|gb|EH993217.1|EH993217
EST:     TGCGGTGTAGTAGCCATAATCATAGTGAAG                         ATCGTGAATCCGAATAACAAAGACATTAGGGACATCCCAGGATTAGCTCCT
genomic: TGCGGTGTAGTAGCCATAATCATAGTGAAGgtactgtctt ... aattcttcagATCGTGAATCCGAATAACAAAGACATTAGGGACATCCCAGGATTAGCTCCT
EST: gi|125231481|gb|EL245566.1|EL245566
EST:     GGTTCCTGTTTCTCATTGTATGCGGTGTAGTAGCCATAATCATAGTGAAG                         ATCGTGAATCCGAATAACAAA
genomic: GGTTCCTGTTTCTCATTGTATGCGGTGTAGTAGCCATAATCATAGTGAAGgtactgtctt ... aattcttcagATCGTGAATCCGAATAACAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgtgattgctcattagcaagttgtaactctggtttttgtattaattcttcagATCGTGAATCCGAATAACAAAGACATTAGGGACATCCCAGGATTAGCTCCTCCAGCGCAATCGAGGAAGCTATTGTACTTGAGGAATCAAGACTACATGT
                                         tattaat  putative branch site (score: 2)
                                               ttcttc  CT-rich tract
                                   tttttgtattaattct  TA-rich tract