1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAAGGTATTCAATACGTCAAGTTCGACTATGTGAAAGGTGGAGTAACAAAACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAGgtaagcttacgtacaactttctttcaaggtttctaactatattttatacaaagattatattactgacattgtgaaccctttttaattttttgggtag
species | Arabidopsis thaliana |
transcript | AT3G16460.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAG TTTGTGATTAACCATCCGGATGAGTATEST: gi|125094161|gb|EL151700.1|EL151700
genomic: AACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAGgtaagcttac ... ttttgggtagTTTGTGATTAACCATCCGGATGAGTAT
EST: AACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAG TTTGTGATTAACCATCCGGATGAGTATCTTGTTTCTGTTGAGGGTTGGTATEST: gi|125296669|gb|EL310754.1|EL310754
genomic: AACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAGgtaagcttac ... ttttgggtagTTTGTGATTAACCATCCGGATGAGTATCTTGTTTCTGTTGAGGGTTGGTAT
EST: AACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAG TTTGTGATTAACCATCCGGATGAGTATEST: gi|124968253|gb|EL042221.1|EL042221
genomic: AACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAGgtaagcttac ... ttttgggtagTTTGTGATTAACCATCCGGATGAGTAT
EST: AACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAG TTTGTGATTAACCATCCGGA
genomic: AACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAGgtaagcttac ... ttttgggtagTTTGTGATTAACCATCCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGGTATTCAATACGTCAAGTTCGACTATGTGAAAGGTGGAGTAACAAAACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAGgtaagcttacgtacaactttctttcaaggtttctaactatattttatacaaagattatattactgacattgtgaaccctttttaattttttgggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA