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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttacgtacaactttctttcaaggtttctaactatattttatacaaagattatattactgacattgtgaaccctttttaattttttgggtagTTTGTGATTAACCATCCGGATGAGTATCTTGTTTCTGTTGAGGGTTGGTATGAAACCGTCATGCTAGGAATCCAGTTCAAAACGAACTTGAACACTTATG

Basic information

species Arabidopsis thaliana
transcript AT3G16460.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125264866|gb|EL278951.1|EL278951
EST:     AACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAG                         TTTGTGATTAACCATCCGGATGAGTAT
genomic: AACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAGgtaagcttac ... ttttgggtagTTTGTGATTAACCATCCGGATGAGTAT
EST: gi|125094161|gb|EL151700.1|EL151700
EST:     AACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAG                         TTTGTGATTAACCATCCGGATGAGTATCTTGTTTCTGTTGAGGGTTGGTAT
genomic: AACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAGgtaagcttac ... ttttgggtagTTTGTGATTAACCATCCGGATGAGTATCTTGTTTCTGTTGAGGGTTGGTAT
EST: gi|125296669|gb|EL310754.1|EL310754
EST:     AACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAG                         TTTGTGATTAACCATCCGGATGAGTAT
genomic: AACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAGgtaagcttac ... ttttgggtagTTTGTGATTAACCATCCGGATGAGTAT
EST: gi|124968253|gb|EL042221.1|EL042221
EST:     AACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAG                         TTTGTGATTAACCATCCGGA
genomic: AACAAGGAGTTCTACACGGTAAACAACAAAGTAGACAAAATCCAAGAGAGgtaagcttac ... ttttgggtagTTTGTGATTAACCATCCGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatacaaagattatattactgacattgtgaaccctttttaattttttgggtagTTTGTGATTAACCATCCGGATGAGTATCTTGTTTCTGTTGAGGGTTGGTATGAAACCGTCATGCTAGGAATCCAGTTCAAAACGAACTTGAACACTTATG
                                 ccctttttaatttttt  CT-rich tract
                                    tttttaatttttt  TA-rich tract