1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...accggattagtattaatgttacttgtacctgttcatagtactaaccaaaaatgatccaaaaaaatgaaaataacaaataaaccatttatggttatcacagATAGATAAAAGAAGTCAACAACGATGTCTTGGGACGATGGATCACACGCAAAGGTGAAGAAAGTGCAGCTAACCTTCGATGAGATCATCTACTCAATCCA
species | Arabidopsis thaliana |
transcript | AT3G16460.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACACCTAATCTTCATCTTCATCTTCGCATTCATAGTCTCTACGATCAG ATAGATAAAAGAAGTCAAAAACGATGTCTGGGGAGGATGGATCACACGCAAEST: gi|86064962|gb|DR360719.1|DR360719
genomic: ACACCTAATCTTCATCTTCATCTTCGCATTCATAGTCTCTACGATCAGgtaatccccc ... gttatcacagATAGATAAAAGAAGTCAACAACGATGTCTTGGGACGATGGATCACACGCAA
EST: ACACCTAATCTTCATCTTCATCTTCGCATTCATAGTCTCTACGATCAG ATAGATAAAAGAAGTCAACAACGATGTCTTGGGACGATGGATCACACGCAAEST: gi|86064960|gb|DR360717.1|DR360717
genomic: ACACCTAATCTTCATCTTCATCTTCGCATTCATAGTCTCTACGATCAGgtaatccccc ... gttatcacagATAGATAAAAGAAGTCAACAACGATGTCTTGGGACGATGGATCACACGCAA
EST: ACACCTAATCTTCATCTTCATCTTCGCATTCATAGTCTCTACGATCAG ATAGATAAAAGAAGTCAACAACGATGTCTTGGGACGATGGATCACACGCAA
genomic: ACACCTAATCTTCATCTTCATCTTCGCATTCATAGTCTCTACGATCAGgtaatccccc ... gttatcacagATAGATAAAAGAAGTCAACAACGATGTCTTGGGACGATGGATCACACGCAA
caaaaatgatccaaaaaaatgaaaataacaaataaaccatttatggttatcacagATAGATAAAAGAAGTCAACAACGATGTCTTGGGACGATGGATCACACGCAAAGGTGAAGAAAGTGCAGCTAACCTTCGATGAGATCATCTACTCAATCCA
aaataac putative branch site (score: 2)
aaaaaaatgaaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accggattagtattaatgttacttgtacctgttcatagtactaaccaaaaatgatccaaaaaaatgaaaataacaaataaaccatttatggttatcacagATAGATAAAAGAAGTCAACAACGATGTCTTGGGACGATGGATCACACGCAAAGGTGAAGAAAGTGCAGCTAACCTTCGATGAGATCATCTACTCAATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - ctgttca
- - - - - - - - - - - - - - - - - - - - - - -caaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa