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gtactaataacgtgattgtttcactgtcccaagcgcattacagaatctatttcttttgaagtttccttgaactccaatttcacaactcttacagGATATAACTCTTCAAGAAGCTGAAACAATAGCTGTATCTATCCTAAAGCAAGTAATGGAAGAAAAG
species | Arabidopsis thaliana |
transcript | AT3G14290.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGTCTGGCTCAGAAGGAGCTGATAGTTCTCTCCAAGAGCAATTCAACAAG GATATAACTCTTCAAGAAGCTGAAACAATAGCTGTATCTATCCTAAAGCAAEST: gi|124769520|gb|EH859650.1|EH859650
genomic: GGTCTGGCTCAGAAGGAGCTGATAGTTCTCTCCAAGAGCAATTCAACAAGgtactaataa ... actcttacagGATATAACTCTTCAAGAAGCTGAAACAATAGCTGTATCTATCCTAAAGCAA
EST: GGTCTGGCTCAGAAGGAGCTGATAGTTCTCTCCAAGAGCAATTCAACAAG GATGTAACTCTTCAEST: gi|164205248|gb|ES087359.1|ES087359
genomic: GGTCTGGCTCAGAAGGAGCTGATAGTTCTCTCCAAGAGCAATTCAACAAGgtactaataa ... actcttacagGATATAACTCTTCA
EST: TGGCTCAGAAGGAGCTGATAGTTCTCTCCAAGAGCAATTCAACAAG GATATAACTCTTCAAGAAGCTGAAACAATAGCTGTATCTATCCTAAAGCEST: gi|125021690|gb|EL093959.1|EL093959
genomic: TGGCTCAGAAGGAGCTGATAGTTCTCTCCAAGAGCAATTCAACAAGgtactaataa ... actcttacagGATATAACTCTTCAAGAAGCTGAAACAATAGCTGTATCTATCCTAAAGC
EST: AAGGAGCTGATAGTTCTCTCCAAGAGCAATTCAACAAG GATATAACTCTTCAAGAAGCTGAAACAATAGCTGTATCTATCCTAAAGCAA
genomic: AAGGAGCTGATAGTTCTCTCCAAGAGCAATTCAACAAGgtactaataa ... actcttacagGATATAACTCTTCAAGAAGCTGAAACAATAGCTGTATCTATCCTAAAGCAA
acagaatctatttcttttgaagtttccttgaactccaatttcacaactcttacagGATATAACTCTTCAAGAAGCTGAAACAATAGCTGTATCTATCCTAAAGCAAGTAATGGAAGAAAAG
ctcttac CT-rich tract
tatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactaataacgtgattgtttcactgtcccaagcgcattacagaatctatttcttttgaagtttccttgaactccaatttcacaactcttacagGATATAACTCTTCAAGAAGCTGAAACAATAGCTGTATCTATCCTAAAGCAAGTAATGGAAGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA