1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagatctcagtttctgactttctgtttctcatggatttgtttttacatcaaaagttctttctgttaccaactggttttattatgttgagcagAACCACAGGTTCTCGTATGGTGAGCCAATGACTGTAGAATCTACAACACAAGCTTTGTGTGATCTTGCTTTACGGTTTGGTGAAGGAGAGGAAGAGTCAA
species | Arabidopsis thaliana |
transcript | AT3G14290.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACACTTGTTGAGCATGCACGAGTAGAGACCCAG AACCACAGGTTCTCGTATGGTGAGCCAATGACTGTAGAATCTACAACACAAEST: gi|116474984|gb|EG517576.1|EG517576
genomic: ACACTTGTTGAGCATGCACGAGTAGAGACCCAGgtgagatctc ... tgttgagcagAACCACAGGTTCTCGTATGGTGAGCCAATGACTGTAGAATCTACAACACAA
EST: TGATTGCTGACGCGCGAACACTTGTTGAGCATGCACGAGTAGAGACCCAG AACCACAGGTTCTCGTATGGTGAGCCAATGACTGTEST: gi|163971098|gb|ES011042.1|ES011042
genomic: TGATTGCTGACGCGCGAACACTTGTTGAGCATGCACGAGTAGAGACCCAGgtgagatctc ... tgttgagcagAACCACAGGTTCTCGTATGGTGAGCCAATGACTGT
EST: TGATTGCTGACGCGCGAACACTTGTTGAGCATGCACGAGTAGAGACC-AG AACCACAGGTTCTCGTATGGTEST: gi|86075577|gb|DR371334.1|DR371334
genomic: TGATTGCTGACGCGCGAACACTTGTTGAGCATGCACGAGTAGAGACCCAGgtgagatctc ... tgttgagcagAACCACAGGTTCTCGTATGGT
EST: TGATTS-TGACGCGCGAACACTTGTTGAGCATGCACGAGTAGAGACCCAG AACCACAGGTTCTCGTATGGTGAGCCAATGACTGTAGAATCTACAACACAA
genomic: TGATTGCTGACGCGCGAACACTTGTTGAGCATGCACGAGTAGAGACCCAGgtgagatctc ... tgttgagcagAACCACAGGTTCTCGTATGGTGAGCCAATGACTGTAGAATCTACAACACAA
tgtttttacatcaaaagttctttctgttaccaactggttttattatgttgagcagAACCACAGGTTCTCGTATGGTGAGCCAATGACTGTAGAATCTACAACACAAGCTTTGTGTGATCTTGCTTTACGGTTTGGTGAAGGAGAGGAAGAGTCAA
ttttattatgttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatctcagtttctgactttctgtttctcatggatttgtttttacatcaaaagttctttctgttaccaactggttttattatgttgagcagAACCACAGGTTCTCGTATGGTGAGCCAATGACTGTAGAATCTACAACACAAGCTTTGTGTGATCTTGCTTTACGGTTTGGTGAAGGAGAGGAAGAGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA