1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACATTGAGGTTTATCTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAGgtacaaaattgagcatttcttccttcgatttcttcagaatcgtgtatcaccgtttctgggaaaacttcgaatccaacgattatggtgcttgtattgatcaagtttttttttttttttttttttgttcttaag
species | Arabidopsis thaliana |
transcript | AT3G14290.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATTGAGGTTTATCTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAG GACTGAGCTATGACAGAGGAGTCAATACATTTTCTCCTGAAGGTCGTCTCTEST: gi|125245276|gb|EL259361.1|EL259361
genomic: CATTGAGGTTTATCTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAGgtacaaaatt ... tgttcttaagGACTGAG-TATGACAGAGGAGTCAATACATTTTCTCCTGAAGGTCGTCTCT
EST: TTGAGGTTTATCTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAG GACTGAGTATGACAGAGGAGTCAATACTATTTTCTCCTGAAGGTCGTCTEST: gi|116474984|gb|EG517576.1|EG517576
genomic: TTGAGGTTTATCTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAGgtacaaaatt ... tgttcttaagGACTGAGTATGACAGAGGAGTCAATAC-ATTTTCTCCTGAAGGTCGTCT
EST: CATTGAGGTTTATCTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAG GACTGAGTATGACAGAGGGGTCAATACATTTTCTCCTGAAGGTCGTCTCTTEST: gi|86075577|gb|DR371334.1|DR371334
genomic: CATTGAGGTTTATCTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAGgtacaaaatt ... tgttcttaagGACTGAGTATGACAGAGGAGTCAATACATTTTCTCCTGAAGGTCGTCTCTT
EST: CATTGAGGTTTATCTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAG GACTGAGTATGACAGAGGAGTCAATACATTTTCTCCTGAAGGTCGTCTCTT
genomic: CATTGAGGTTTATCTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAGgtacaaaatt ... tgttcttaagGACTGAGTATGACAGAGGAGTCAATACATTTTCTCCTGAAGGTCGTCTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATTGAGGTTTATCTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAGgtacaaaattgagcatttcttccttcgatttcttcagaatcgtgtatcaccgtttctgggaaaacttcgaatccaacgattatggtgcttgtattgatcaagtttttttttttttttttttttgttcttaag
- - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - AAGATG