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gtaatttttctttattctgagctaccaaaatgatattgtgatgcaaatagcctaacaagtttctactgtgcagTTGCTTCTTGTTGACAAGAAAGTAACCAATGCAAGGGATCTTGTTGGGGTTCTAGAGGATGCGATTAGAGGCGGATACCCAATCCTCATAATTGCAGAAG
species | Arabidopsis thaliana |
transcript | AT3G13470.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCTGTTGAGTATGACAATTGCAAG TTGGCTTCTTGTTGACAAGAAAGTAACCAATGCAAGGGATCTTGTTGGGGTEST: gi|124835757|gb|EH920196.1|EH920196
genomic: TCTGTTGAGTATGACAATTGCAAGgtaatttttc ... tactgtgcagTT-GCTTCTTGTTGACAAGAAAGTAACCAATGCAAGGGATCTTGTTGGGGT
EST: TGAGAAAATGTCTGTTGAGTATGACAATTGCAAG TTGCTTCTTGTTGACAAGAAAGTAACCAATGCAAGGGATCTTGTTGGGGTT
genomic: TGAGAAAATGTCTGTTGAGTATGACAATTGCAAGgtaatttttc ... tactgtgcagTTGCTTCTTGTTGACAAGAAAGTAACCAATGCAAGGGATCTTGTTGGGGTT
gagctaccaaaatgatattgtgatgcaaatagcctaacaagtttctactgtgcagTTGCTTCTTGTTGACAAGAAAGTAACCAATGCAAGGGATCTTGTTGGGGTTCTAGAGGATGCGATTAGAGGCGGATACCCAATCCTCATAATTGCAGAAG
gcctaac putative branch site (score: 2)
tttctact putative PPT
aaaatgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttttctttattctgagctaccaaaatgatattgtgatgcaaatagcctaacaagtttctactgtgcagTTGCTTCTTGTTGACAAGAAAGTAACCAATGCAAGGGATCTTGTTGGGGTTCTAGAGGATGCGATTAGAGGCGGATACCCAATCCTCATAATTGCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG