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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGTAAGGCAAGCAGCTGCAAAGACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATTGCTGAGGGTGTCAAGgttgttacattcttctttcagctttctctgattttatactcagaagaacagtatattaatctgaaattttgtatttttcag

Basic information

species Arabidopsis thaliana
transcript AT3G13470.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os06g02380.2 (Oryza sativa), 5'ss of exon 4
GCTTGTAAGGCAAGCAGCTGCAAAGACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATTGCTGAGGGTGTCAAGgt-tgttac--attcttctttcagctttctctgattt-tatactcagaagaacagta--tattaatctg-aaattttgt----atttttcag--------------
| | || ||||||||||| |||||||||||||| || ||||| || || ||||| || |||||||| ||||| || ||  | |||||||||||||| ||||| || ||    ||      | ||   ||| | | || |||  |||       |  |    ||||| ||  || |  ||    ||  ||||               
GTTGGTTAGGCAAGCAGCAGCAAAGACCAATGATTTAGCTGGAGATGGCACAACTACTTCTGTTGTGCTTGCTCAGGGGCTGATTGCTGAGGGTGTTAAGgtatgctattagttgagacatgagacctctattacttgtatggtcaatctgttaagagtcgttaatttgtgaactaagtgaaaataattcatttgctctttttcag

upper sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os02g01280.1 (Oryza sativa), 5'ss of exon 4
GCTTGTAAGGCAAGCAGCTGCAAAGACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATTGCTGAGGGTGTCAAGgttgttacattcttctttcagctttct---ctgattttatactcagaagaacagtatattaatctga----aattttgtatttttcag---------
  | ||  ||||||| || || ||||| ||||| ||||||||||| || ||||| || |||||||| ||||| |||||  | ||  | |||||||| |||||    |||    | |   ||| || |    | |||||| |  || ||  |   ||  |   ||||     |||  || || | |            
ATTAGTCCGGCAAGCTGCAGCCAAGACAAATGATTTGGCTGGTGATGGGACAACGACTTCTGTTGTCCTTGCTCAAGGGATGATCACAGAGGGTGTTAAGgt----acaccaatataaaagccttgtatcttaattttacag-cataaatattttacttggttctgggaacaatcgtggatctgtttactttcccag

upper sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 4
GCTTGTAAGGCAAGCAGCTGCAAAGACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATTGCTGAGGGTGTCAAGgt-----------tgttacattcttctttcagctttctctgattttatactcagaagaacagtatattaatctgaa-attttgtatttttcag---
  | ||  | ||||| ||||| || || ||||||||||||||||| || ||||| || || ||||| ||||| |||||  | ||| |||||||||| |||||           | | || |  |   ||  | | ||| |    | |   |       |      | ||    ||  ||||||    ||||     
ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgctagtatataacctcatgtattggggtatctatatcgtcactgttccggccatgtctcaatatctagaggattttgctactttctccag

upper sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 3
GCTTGTAAGGCAAGCAGCTGCAAAGACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATTGCTGAGGGTGTCAAGgttgttacattcttctttcagctttctctgattttatactcagaagaacagtatattaatctgaaattttgtatttt--tcag--------------------------
| | || || ||||| ||||| ||||| || |||||||||||||| || || || || || ||||||||||| || ||| |||| || || ||||||||||| |    ||| ||  ||    | |     ||||  |      |  || |     ||  | |    ||||||| |      ||                          
GTTGGTGAGACAAGCGGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtagg---attatttgttgtcttattggaaatttagtgtcataactaataactacttggttttgttttttgtaatgcaactaggcctcattttatgttaattttcgcag

upper sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 3
GCTTGTAAGGCAAGCAGCTGCAAAGACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATTGCTGAGGGTGTCAAGgttgttacattcttctttcagctttctctgattttatactcagaagaacagtatattaatctgaaattttgtattt----ttcag-------------------
| | || || ||||||||||| ||||| || |||||||||||||| || || || || || |||||||| || || ||| ||||||| || || || |||||    | ||| ||  ||  | ||||    || |  |  ||| |  || |     |   | |   |||||||| ||     |||                    
GTTGGTGAGACAAGCAGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACTTCGGTTGTTCTAGCTCAGGGTCTTATTGCCGAAGGCGTTAAGgta---aaattatttgttgtgttttcggaaatgtagtgttcatactaataactactcggttttggattttgtaattaggcctcattttatgttaatttttgcag

upper sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 5'ss of exon 4
GCTTGTAAGGCAAGCAGCTGCAAAGACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATTGCTGAGGGTGTCAAGgttgttacattcttctttcagctttctctgattt-tatactcagaagaacagtatattaatctga-aattttgtatttttcag-------------------------
  | || || ||||||||||| |||||||| ||||||||||| || || |||||||||||||||||||||||||||||  |||||||||| |||||||||||   |   | |||   ||   ||| | || |    ||    |  | |  | | ||   |  ||| ||   ||| ||| |                            
ATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTGTTGTTCTTGCACAAGGGCTTATTGCTGAAGGTGTCAAGgtctgtttttgcttaactc--ttttgtttggtaaacatgaagaacatagtaatctaaggaaatgataacactgtgtttgttgctaactaagatcattcattcattcag

upper sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S276_75V6.1 (Physcomitrella patens), 5'ss of exon 3
GCTTGTAAGGCAAGCAGCTGCAAAGACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATTGCTGAGGGTGTCAAGgttgttacattcttctttcagctttctc--tgattttatactcagaagaacagtatattaatctgaaatt-ttgtatttttcag-------------------------------------------------------------
| | || ||||||||  |||| |||||||| || ||||||||||| ||||| || || ||||| |||||||| |||||  | ||||| |||||||||||||| | | |||    |       | |||   | || |  || |    |       |  ||| ||   | || || |     ||                                                               
GTTGGTTAGGCAAGCTTCTGCCAAGACCAACGATTTGGCTGGTGATGGTACCACCACCTCTGTGGTTCTTGCTCAAGGGCTCATTGCCGAGGGTGTCAAGgtagcttcatcacccgcctgaatgtcttcttaatgtagtatttgcgatctttcaaagttactcctcagttgttatcgcactcgaatcgaatattcggctcaatctatgaagttgagctaatctggtcaactttcttcacacgtag

upper sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S14_298V6.1 (Physcomitrella patens), 5'ss of exon 3
GCTTGTAAGGCAAGCAGCTGCAAAGACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATTGCTGAGGGTGTCAAGgttgttacattcttctt-tcagct--ttctctgattttatactcagaagaacagtatattaatctgaaatttt-gtatttttcag-----------------------------
| | || |||||||| || || ||||| ||||||||||||||||||||||| || || ||||| ||||| ||||||||  | ||||||||||| |||||||| | | || | ||||  ||| |   |||||| || ||  | |||| ||| | ||   | | | ||    | | ||   | | |                              
GTTGGTGAGGCAAGCGGCAGCCAAGACGAATGACTTGGCTGGTGACGGTACCACCACCTCTGTCGTTCTCGCACAAGGGCTCATTGCTGAGGGCGTCAAGgtaggttcacttttctcatcatcaaattctct-atatttcattcaggaga-ctgtgattcactatggctctctcgtgcctgtgaagctactaaggtttttgcataattctgtag