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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGCCTCAGTTGCAAAGACGTTCTTGATGTCTGACTGTGTGGTTGTTGAGATCCCAGAGCCAGAGCCAGTTCCTGCTGGTAACCCAATGGACAACTCAGgttagtccagaccttctgattcataaaaactggacagtgacatcaaaacaaaactcatgtttcttcatcactgaatctttctcgattgtcttgtttcag

Basic information

species Arabidopsis thaliana
transcript AT3G13470.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878666|gb|AU239497.1|AU239497
EST:     GATCCCAGAGCCAGAGCCAGTTCCTGCTGGTAACCCAATGGACAACTCAG                         GTTATGGATACTAAGATAGACCGACCAGGTTTGTTCGTAAAGCTGAGAGAT
genomic: GATCCCAGAGCCAGAGCCAGTTCCTGCTGGTAACCCAATGGACAACTCAGgttagtccag ... cttgtttcagGTTATGGATACTAAGATAGACCGACCAGGTTTGCTCGTAAAGCTGAGAGAT
EST: gi|124798827|gb|EH888506.1|EH888506
EST:     GATCCCAGAGCCAGAGCCAGTTCCTGCTGGTAACCCAATGGACAACTCAG                         GTTATGGATACTAAGATAGACCGACCA
genomic: GATCCCAGAGCCAGAGCCAGTTCCTGCTGGTAACCCAATGGACAACTCAGgttagtccag ... cttgtttcagGTTATGGATACTAAGATAGACCGACCA
EST: gi|124719661|gb|EH811063.1|EH811063
EST:     GATCCCAGAGCCAGAGCCAGTTCCTGCTGGTAACCCAATGGACAACTCAG                         GTTATGGATACTAAGATAGACCGACCAGGTTT
genomic: GATCCCAGAGCCAGAGCCAGTTCCTGCTGGTAACCCAATGGACAACTCAGgttagtccag ... cttgtttcagGTTATGGATACTAAGATAGACCGACCAGGTTT