1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatattgctattgtctgggatgtttctgctcagattgctattagaaatgactaggataggttttttaaaacatattgacataacaaagatttctcttgtgactgtactaatgtttggtaacatatatgtatcatgcagGAAAAAGAGCAGCAGATGGAAGAGCTAAACGCTAAGGAAGAGGAACTTCTCAAAGGAAACCCATTGCTTAATACTCCAACGTCTTTTAGCGTCAAAAGGA
species | Arabidopsis thaliana |
transcript | AT3G13200.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGGAACTCGACCAGATAAAGAAAGAAAGAGTGGAAGAGAGGCTCAGGAAG GAAAAAGAGCAGCAGATGGAAGAGCTAAAEST: gi|164229282|gb|ES190985.1|ES190985
genomic: CGGAACTCGACCAGATAAAGAAAGAAAGAGTGGAAGAGAGGCTCAGGAAGgtaatattgc ... tatcatgcagGAAAAAGAGCAGCAGATGGAAGAGCTAAA
EST: AAGAAAGAGTGGAAGAGAGGCTCAGGAAG G-AAAAGAGCAGCAGATGGAAGAGCTAAACGCTAAGGAAGAGGAACTTCTC
genomic: AAGAAAGAGTGGAAGAGAGGCTCAGGAAGgtaatattgc ... tatcatgcagGAAAAAGAGCAGCAGATGGAAGAGCTAAACGCTAAGGAAGAGGAACTTCTC
caaagatttctcttgtgactgtactaatgtttggtaacatatatgtatcatgcagGAAAAAGAGCAGCAGATGGAAGAGCTAAACGCTAAGGAAGAGGAACTTCTCAAAGGAAACCCATTGCTTAATACTCCAACGTCTTTTAGCGTCAAAAGGA
taacatatatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatattgctattgtctgggatgtttctgctcagattgctattagaaatgactaggataggttttttaaaacatattgacataacaaagatttctcttgtgactgtactaatgtttggtaacatatatgtatcatgcagGAAAAAGAGCAGCAGATGGAAGAGCTAAACGCTAAGGAAGAGGAACTTCTCAAAGGAAACCCATTGCTTAATACTCCAACGTCTTTTAGCGTCAAAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA