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gtaagataataaatttcaagccttttcattatgatttggactaatgagttttttttttctatcattagATGATAGAGATCGCAGAAGAGGAAGTCAGCTTTTACTGGAAG
species | Arabidopsis thaliana |
transcript | AT3G13200.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACAAATCATACAATG ATGATAGAGATCGCAGAAGAGGAAGTCAGCTTTTACNGGAAGEST: gi|124715067|gb|EH806469.1|EH806469
genomic: GACAAATCATACAATGgtaagataat ... ctatcattagATGATAGAGATCGCAGAAGAGGAAGTCAGCTTTTACTGGAAG
EST: AAATCATACAATG ATGATAGAGATCGCAGAAGAGGAAGTCAGC-TTTACTGGAAG
genomic: AAATCATACAATGgtaagataat ... ctatcattagATGATAGAGATCGCAGAAGAGGAAGTCAGCTTTTACTGGAAG
tttcaagccttttcattatgatttggactaatgagttttttttttctatcattagATGATAGAGATCGCAGAAGAGGAAGTCAGCTTTTACTGGAAG
gactaat putative branch site (score: 2)
ttttttttttctatca putative PPT
taatgagttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagataataaatttcaagccttttcattatgatttggactaatgagttttttttttctatcattagATGATAGAGATCGCAGAAGAGGAAGTCAGCTTTTACTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG