1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGATAGAGATCGCAGAAGAGGAAGTCAGCTTTTACTGGAAGgttagagaaattcatttatttatttatgatcgttatttgtgtcacattagatagtttgatcgtgtgttttctaacctttataccctctatttag
species | Arabidopsis thaliana |
transcript | AT3G13200.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCAGAAGAGGAAGTCAGCTTTTACTGGAAG GCTCGAAAAGGGATCCTGAAGAGCGGATTATTCCTCGCAGTGTAGATGCTGEST: gi|124880445|gb|EH959347.1|EH959347
genomic: GCAGAAGAGGAAGTCAGCTTTTACTGGAAGgttagagaaa ... ctctatttagACTCGAAAAGGGATCCTGAAGAGCGGATTATTCCTCGCAGTGTAGATGCTG
EST: ATGATAGAGATCGCAGAAGAGGAAGTCAGCTTTTACNGGAAG ACTCGAAAAGGGEST: gi|124715067|gb|EH806469.1|EH806469
genomic: ATGATAGAGATCGCAGAAGAGGAAGTCAGCTTTTACTGGAAGgttagagaaa ... ctctatttagACTCGAAAAGGG
EST: ATGATAGAGATCGCAGAAGAGGAAGTCAGC-TTTACTGGAAG ACTCGAAAAGGGATCCTGAAGAGCGGATTATTCCTCGCAGTG
genomic: ATGATAGAGATCGCAGAAGAGGAAGTCAGCTTTTACTGGAAGgttagagaaa ... ctctatttagACTCGAAAAGGGATCCTGAAGAGCGGATTATTCCTCGCAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGATAGAGATCGCAGAAGAGGAAGTCAGCTTTTACTGGAAGgttagagaaattcatttatttatttatgatcgttatttgtgtcacattagatagtttgatcgtgtgttttctaacctttataccctctatttag
- - - GAGATC
- - - - - - - - AAGAGG
- - - - - - - - AGAGGA
- - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - TGGAAG