Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatatgtatatgttttgaacgaataatatatagtactgatcatttaacgttcatatatatactaattaattactgatttcttgcagGCGAATCTTGCAAGATGGGAACCAGGGCATGGACGTTTCAGGTTACGGCACCCGTGGAAAAAGTACTTGAAAATTGCAGGACTCGTTCGCCAATGTGCCG

Basic information

species Arabidopsis thaliana
transcript AT3G11680.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116404273|gb|EG446865.1|EG446865
EST:     TTCGAGAATACAAAAGCATTCTAACATAAAAAAGCACTGAAGATAGTTTG                         GCGAATCTTGCAA
genomic: TTCGAGAATACAAAAGCATTCTAACATCAAAAAGCACTGAAGATAGTTTGgtatgtatat ... tttcttgcagGCGAATCTTGCAA
EST: gi|116404278|gb|EG446870.1|EG446870
EST:     TTCGAGAATACAAAAGCATTCTAACATCAGAAAGCACTGAAGATAGTTTG                         GCGAATCTTGCAAG
genomic: TTCGAGAATACAAAAGCATTCTAACATCAAAAAGCACTGAAGATAGTTTGgtatgtatat ... tttcttgcagGCGAATCTTGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtactgatcatttaacgttcatatatatactaattaattactgatttcttgcagGCGAATCTTGCAAGATGGGAACCAGGGCATGGACGTTTCAGGTTACGGCACCCGTGGAAAAAGTACTTGAAAATTGCAGGACTCGTTCGCCAATGTGCCG
                                             tttcttgc  CT-rich tract
       atcatttaacgttcat  TA-rich tract