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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTCATTGTTGTACTATGTGCGACCACTCTACATCAGCTTTGGGGTCACGGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTGgtaagtctatcaaaccgtactaatttattaccttgaaaaaacaggatgtagtattaattaaagattctgattaaaaaacactatctaataaccatttttgtgtag

Basic information

species Arabidopsis thaliana
transcript AT3G11680.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G11680.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv08s0105g00250.t01 (Vitis vinifera), 5'ss of exon 1
GTGTCATTGTTGTACTATGTGCGACCACTCTACATCAGCTTTGGGGTCACGGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTGgtaagtctatcaaaccgtactaat---ttattaccttgaaaa---aacaggatgtagtattaattaaagattctgattaaaaaacactatctaataaccatttttgtgtag
 | ||  |||| |||||| |  |||| || ||   ||| ||||||||| |||||||||||||  | || ||||| || ||||||||||||||||||||||||||| ||||| |  ||  || ||   ||||| |||| | ||   || |  |  ||  | |  ||||   |     ||||      || ||                    
ATATCCATGTTCTACTATTTCAGACCCCTGTATGACAGTTTTGGGGTCTCGGGTATGTGGGCTGTCCTGACCGTGGTGGTGGTCTTCGAATTCACTGTTGgtaag-ctatcta-tcgggcttatgcattattccctttataagtcaataaaacataagaatccttaagtttgtgccttaatttgttctttcag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116404281|gb|EG446873.1|EG446873
EST:     GGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTG                         GTGGAACACTTTCCAAAGGTTTAAACAGAGGGTTTGCAACATTAATAGCAG
genomic: GGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTGgtaagtctat ... ttttgtgtagGTGGAACACTTTCCAAAGGTTTAAACAGAGGGTTTGCAACATTAATAGCAG
EST: gi|116404273|gb|EG446865.1|EG446865
EST:     GGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTG                         GTGGAACACTTTCCAAAGGTTTAAACAGAGGGTTTGCAACATTAATAGCAG
genomic: GGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTGgtaagtctat ... ttttgtgtagGTGGAACACTTTCCAAAGGTTTAAACAGAGGGTTTGCAACATTAATAGCAG
EST: gi|116404286|gb|EG446878.1|EG446878
EST:     GGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTG                         GTGGAACACTTTCCAAAGGTTTAAACAGAGGGTTTGCAACATTAATAGCAG
genomic: GGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTGgtaagtctat ... ttttgtgtagGTGGAACACTTTCCAAAGGTTTAAACAGAGGGTTTGCAACATTAATAGCAG
EST: gi|116404475|gb|EG447067.1|EG447067
EST:     GGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTG                         GTGGAACACTTTCCAAAGGTTTAAACAGAGGGTTTGCAACATTAATAGCAG
genomic: GGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTGgtaagtctat ... ttttgtgtagGTGGAACACTTTCCAAAGGTTTAAACAGAGGGTTTGCAACATTAATAGCAG
EST: gi|116404282|gb|EG446874.1|EG446874
EST:     GGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTG                         GTGGAACACTTTCCAAAGGTTTAAACAGAGGGTTTGCAACATTAATAGCAG
genomic: GGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTGgtaagtctat ... ttttgtgtagGTGGAACACTTTCCAAAGGTTTAAACAGAGGGTTTGCAACATTAATAGCAG
EST: gi|116404280|gb|EG446872.1|EG446872
EST:     GGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTG                         GTGGAACACTTTCCAAAGGTTTAAACAGAGGGTTTGCAACATTAATAGCAG
genomic: GGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTGgtaagtctat ... ttttgtgtagGTGGAACACTTTCCAAAGGTTTAAACAGAGGGTTTGCAACATTAATAGCAG
EST: gi|116404444|gb|EG447036.1|EG447036
EST:     GGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTG                         GTGGAACACTTTCCAAAGGTTTAAACAGAGGGTTTGCAACATTAATAGCAG
genomic: GGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTGgtaagtctat ... ttttgtgtagGTGGAACACTTTCCAAAGGTTTAAACAGAGGGTTTGCAACATTAATAGCAG
EST: gi|116404284|gb|EG446876.1|EG446876
EST:     GGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTG                         GTGGAACACTTTCCAAAGGTTTAAACAGAGGGTTTGCAACATTAATAGCAG
genomic: GGGTATGTGGGCGATACTTACCGTAGTCGTGGTCTTCGAATTCACTGTTGgtaagtctat ... ttttgtgtagGTGGAACACTTTCCAAAGGTTTAAACAGAGGGTTTGCAACATTAATAGCAG