1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGCATCCTTGTGTCGATTTTCATTTGTCCTGTATGGGCTGGCGAAGATCTTCACAAGATGATTGCTAACAACATTAACAAACTTGCTAAGTACCTAGAAGgtgactaaatatatccaacattttgaattaccttcttcaaagaatatatataccatagatctatttcttatgcatgcatacacgctttttataaaag
species | Arabidopsis thaliana |
transcript | AT3G11680.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCACAAGATGATTGCTAACAACATTAACAAACTTGCTAAGTACCTAGAAG GATTCGAGGGTGAATATTTTCAACCGGAGAAGATTTCAAAGGAGACAAGCTEST: gi|116404278|gb|EG446870.1|EG446870
genomic: TCACAAGATGATTGCTAACAACATTAACAAACTTGCTAAGTACCTAGAAGgtgactaaat ... tttataaaagGATTCGAGGGTGAATATTTTCAACCGGAGAAGATTTCAAAGGAGACAAGCT
EST: TCACAAGATGATTGCTAACAACATTAACAAACTTGCTAAGTACCTAGAAG GATTCGAGGGTGAATATTTTCAACCGGAGAAGATTTCAAAGGAGACAAGCTEST: gi|116404286|gb|EG446878.1|EG446878
genomic: TCACAAGATGATTGCTAACAACATTAACAAACTTGCTAAGTACCTAGAAGgtgactaaat ... tttataaaagGATTCGAGGGTGAATATTTTCAACCGGAGAAGATTTCAAAGGAGACAAGCT
EST: TCACAAGATGATTGCTAACAACATTAACAAACTTGCTAAGTACCTAGAAG GATTCGAGGGTGAATATTTTCAACCGGAGAAGATTTCAAAGGAGACAAGCTEST: gi|116404475|gb|EG447067.1|EG447067
genomic: TCACAAGATGATTGCTAACAACATTAACAAACTTGCTAAGTACCTAGAAGgtgactaaat ... tttataaaagGATTCGAGGGTGAATATTTTCAACCGGAGAAGATTTCAAAGGAGACAAGCT
EST: TCACAAGATGATTGCTAACAACATTAACAAACTTGCTAAGTACCTAGAAG GATTCGAGGGTGAATATTTTCAACCGGAGAAGATCTCAAAGGAGACAAGCTEST: gi|116404282|gb|EG446874.1|EG446874
genomic: TCACAAGATGATTGCTAACAACATTAACAAACTTGCTAAGTACCTAGAAGgtgactaaat ... tttataaaagGATTCGAGGGTGAATATTTTCAACCGGAGAAGATTTCAAAGGAGACAAGCT
EST: TCACAAGATGATTGCTAACAACATTAACAAACTTGCTAAGTACCTAGAAG GATTCGAGGGTGAATATTTTCAACCGGAGAAGATTTCAAEST: gi|116404280|gb|EG446872.1|EG446872
genomic: TCACAAGATGATTGCTAACAACATTAACAAACTTGCTAAGTACCTAGAAGgtgactaaat ... tttataaaagGATTCGAGGGTGAATATTTTCAACCGGAGAAGATTTCAA
EST: TCACAAGATGATTGCTAACAACATTAACAAACTTGCTAAGTACCTAGAAG GATTCGAGGGTGAATATTTTCAACCGGAGAAGATTTCAAAGGAGACAAGCCEST: gi|116404444|gb|EG447036.1|EG447036
genomic: TCACAAGATGATTGCTAACAACATTAACAAACTTGCTAAGTACCTAGAAGgtgactaaat ... tttataaaagGATTCGAGGGTGAATATTTTCAACCGGAGAAGATTTCAAAGGAGACAAGCT
EST: TCACAAGATGATTGCTAACAACATTAACAAACTTGCTAAGTACCTAGAAG GATTCGAGGGTGAATATTTTCAACCGGAGAAGATCTCAAAGGAGACAAGCTEST: gi|116404279|gb|EG446871.1|EG446871
genomic: TCACAAGATGATTGCTAACAACATTAACAAACTTGCTAAGTACCTAGAAGgtgactaaat ... tttataaaagGATTCGAGGGTGAATATTTTCAACCGGAGAAGATTTCAAAGGAGACAAGCT
EST: TCACAAGATGATTGCTAACAACATTAACAATCTTGCTAAGTACCTAGAAG GATTTGAGGGTGAATATTTTCAACCGGAGAAGATTTCAAAGGAGACAAGCT
genomic: TCACAAGATGATTGCTAACAACATTAACAAACTTGCTAAGTACCTAGAAGgtgactaaat ... tttataaaagGATTCGAGGGTGAATATTTTCAACCGGAGAAGATTTCAAAGGAGACAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCATCCTTGTGTCGATTTTCATTTGTCCTGTATGGGCTGGCGAAGATCTTCACAAGATGATTGCTAACAACATTAACAAACTTGCTAAGTACCTAGAAGgtgactaaatatatccaacattttgaattaccttcttcaaagaatatatataccatagatctatttcttatgcatgcatacacgctttttataaaag
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