Sequence
atgc intronic sequence ATGC exonic sequenceGAAGGGATTGGATGCACGACTTCGGGAGATCCGGACTTACCTTGACCTTGTAATCGAAGGAAAACTCCCATTAAACCATGAAATCTTATACCATCTTCAGgtaacacttttaattgtagttgactagtagaatcaaactggttttcgtgtttgtttttttctcagtatccgtgactgctagtaaggattattcagctaaattgaatactcttttgcaaatctgtag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G11270.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G11270.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA11G34980.1 (Glycine max), 5'ss of exon 7
GAAGGGATTGGATGCACGACTTCGGGAGATCCGGACTTACCTTGACCTTGTAATCGAAGGAAAACTCCCATTAAACCATGAAATCTTATACCATCTTCAGgtaacacttttaattgtagttgactagtagaatcaaactggttttcgtgtttgtttttttctcagt--atccgtgactgctagtaaggattattcagctaaattgaatactcttttgcaaatctgtag
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GAAGGGTTTGGATGCAAGACTTAAAGAGATCAGGAGTTACCTTGACCTTGTTATTGATGGAAAGCTTCCATTAAACCATGAGATCCTGTACCATCTGCAGgtttgtttatca--tattcttgcttagtaaat----gctgattat----ttggctttgttatcaattggttcttgaatcttgattaagtattttctgctggtccacattt------------------
upper sequence: AT3G11270.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA18G03360.1 (Glycine max), 5'ss of exon 7
GAAGGGATTGGATGCACGACTTCGGGAGATCCGGACTTACCTTGACCTTGTAATCGAAGGAAAACTCCCATTAAACCATGAAATCTTATACCATCTTCAGgtaacacttttaattgtagttgactagtagaatcaaactggttttcgtgtttgtttttttctcagt--atccgtgactgctagtaaggattattcagctaaattgaatactcttttgcaaatctgtag
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GAAGGGTTTGGATGCAAGACTTAAAGAGATCAGGGGTTACCTTGACCTTGTTATTGATGGAAAGCTTCCATTAAACCATGAGATCCTGTACCATCTGCAGgtttgtttctca--tattcttgcttagtaaat----gctgattat----ttggctttgttatcaattggttcttgaatcttgattaagtattttctgctggtcc--ataatt----------------
upper sequence: AT3G11270.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA03G07990.1 (Glycine max), 5'ss of exon 6
-------------GAAGGGATTGGATGCACGACTTCGGGAGATCCGGACTTACCTTGACCTTGTAATCGAAGGAAAACTCCCATTAAACCATGAAATCTTATACCATCTTCAGgtaacacttttaattgtagttgactagtagaatcaaactggttttcgtgtttgtttttttctcagtatccgtgactgctagtaaggattattcagctaaattgaatactcttttgcaaatctgtag
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AACTCACAGCCTTGAAAGGTTTGGATGCAAGACTTAAAGAGATCAGGGGTTACCTTGACCTTGTTATTGATGGAAAGCTTCCATTAAACCATGAGATCCTgtagcatctgcaggtttgtttctca--tattcttgcttagtaaatgttgatta---tttggctttgttatcaattgattat---tgaattttgattaagtattttctg-------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86084913|gb|DR380672.1|DR380672EST: TAATCGAAGGAAAACTCCCATTAAACCATGAAATCTTATACCATCTTCAG GACGTATTCAACTTGCTTCCTAACTTGAACGTCAACGAGTTGGTTAAAGCC
genomic: TAATCGAAGGAAAACTCCCATTAAACCATGAAATCTTATACCATCTTCAGgtaacacttt ... aaatctgtagGACGTATTCAACTTGCTTCCTAACTTGAACGTCAACGAGTTGGTTAAAGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGGGATTGGATGCACGACTTCGGGAGATCCGGACTTACCTTGACCTTGTAATCGAAGGAAAACTCCCATTAAACCATGAAATCTTATACCATCTTCAGgtaacacttttaattgtagttgactagtagaatcaaactggttttcgtgtttgtttttttctcagtatccgtgactgctagtaaggattattcagctaaattgaatactcttttgcaaatctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA