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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTACAATCGTGTAGCCAAGGACACGAGCAAGCGCGTCGTCGGCGTTTTGCTCGGAAGTAGCTCTCGTGGTACTGTTGACGTCACCAACAGCTACGCAGgtgccttgattttactttttcctttctctttgttctcttcgatctcacagatctctgaaagtttgttaagctcttgctaatctcataattcaatatgttt...

Basic information

species Arabidopsis thaliana
transcript AT3G11270.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G11270.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA11G34980.1 (Glycine max), 5'ss of exon 1
CATTACAATCGTGTAGCCAAGGACACGAGCAAGCGCGTCGTCGGCGTTTTGCTCGGAAGTAGCTCTCGTGGTACTGTTGACGTCACCAACAGCTACGCAGgtgc---cttgattttactttttcctttctctttgttctcttcgatctcacagatctctgaaagtttgttaagctcttgctaatctcataattcaatatgttt
 | |||||  | || ||||| |||||  ||||||||||||||||||| ||||||||      ||     || || || |||||||||||||||||||| ||| |     |||| |  || |||  ||  |  |      ||| |  ||      |   | |     | || |  | ||| |  | |  |     | ||   | 
AACTACAACAGAGTCGCCAAAGACACTCGCAAGCGCGTCGTCGGCGTCTTGCTCGGCTCCTCCTTCAAAGGCACCGTCGACGTCACCAACAGCTACGCCGgtacggatctgatctctctctttttttctttctccaatacttagggcttgtt--ttatttattcccttttcactttttgtttcttttctctgaaattacagt-

upper sequence: AT3G11270.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA18G03360.1 (Glycine max), 5'ss of exon 1
-CATTACAATCGTGTAGCCAAGGACACGAGCAAGCGCGTCGTCGGCGTTTTGCTCGGAAGTAGCTCTCGTGGTACTGTTGACGTCACCAACAGCTACGCAGgtgccttgattttactttttcctttctctttgttctcttcgat-ctcacagatctctgaaagtttgttaagctcttgctaatctcataattcaatat--gttt
  | |||||  | || ||||| |||||  ||||||||||||||||||| ||||||||      ||     || || || ||||| |||||||||||||| ||| |   ||| | |  | |  || ||| |||  | ||| | || || |  |   | | |     | ||    | ||| |  ||||    |  || ||  | | 
CAACTACAACAGAGTCGCCAAAGACACTCGCAAGCGCGTCGTCGGCGTCTTGCTCGGCTCCTCCTTCAAAGGCACCGTCGACGTTACCAACAGCTACGCCggtacg--gatctgatctct--ctctcttttttctttctccaatacttagggcatttttattcccttttccctttttgtttttctctctctctaaaattagatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164170594|gb|EL982405.1|EL982405
EST:     GCTCGGAAGTAGCTCTCGTGGTACTGTTGACGTCACCAACAGCTACGCAG                         TGCCTTTTGAGGAGGATGACAAAGACACAAGCAT
genomic: GCTCGGAAGTAGCTCTCGTGGTACTGTTGACGTCACCAACAGCTACGCAGgtgccttgat ... ggttttacagTGCCTTTTGAGGAGGATGACAAAGACACAAGCAT
EST: gi|19875108|gb|AU235939.1|AU235939
EST:     GCTCGGAAGTAGCTCTCGTGGTACTGTTGACGTCACCAACAGCTACGCAG                         TGCCTTTTGAGGAGGATGACAAAGACACAAGCATATGGTTTCTTGATCACA
genomic: GCTCGGAAGTAGCTCTCGTGGTACTGTTGACGTCACCAACAGCTACGCAGgtgccttgat ... ggttttacagTGCCTTTTGAGGAGGATGACAAAGACACAAGCATATGGTTTCTTGATCACA
EST: gi|164146851|gb|EL996102.1|EL996102
EST:     GACGTCACCAACAGCTACGCAG                         TGCCTTTTGAGGAGGATGACAAAGACACAAGCATATGGTTTCTTGATCACA
genomic: GACGTCACCAACAGCTACGCAGgtgccttgat ... ggttttacagTGCCTTTTGAGGAGGATGACAAAGACACAAGCATATGGTTTCTTGATCACA