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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgctcgggaaatataatgcttaagagtatatatgtggaaagcctcttttttgactgattttcatatttgctttcagCTAAGGAGCATATTGTGGGTTGGTACAGCACAGGTCCTAAACTTCGAGAGAATGATTTGGATGTTCACGCTTTATTCAATGG

Basic information

species Arabidopsis thaliana
transcript AT3G11270.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875108|gb|AU235939.1|AU235939
EST:     TGATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAATTAATG                         CTAAGGAGCATATTGTGGGTTGGTACAGCACAGGTCCTAAACTTCGAGAGA
genomic: TGATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAATTAATGgtattgctcg ... ttgctttcagCTAAGGAGCATATTGTGGGTTGGTACAGCACAGGTCCTAAACTTCGAGAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagagtatatatgtggaaagcctcttttttgactgattttcatatttgctttcagCTAAGGAGCATATTGTGGGTTGGTACAGCACAGGTCCTAAACTTCGAGAGAATGATTTGGATGTTCACGCTTTATTCAATGG
                              gactgat  putative branch site (score: 3)
                                            tttgctttc  putative PPT
                                 tgattttcatattt  TA-rich tract