1 5' 3' | 2 5' 3' | 3 5' 3' |
...cagtccactctgatctgtgtcgaatatattcattttgttatgtgttcttaacttgaattgcgttcttgacttaacggtttccgattcgaatgattcgcagTTGGTGGGAGAAAGCGAAAAGATGAGAATGAAGAAGCTGGAAGAGCTAAGCAAGAACATAGATTCTATACACTGACTTTGAATCCAAGACAGTACAAGAA
species | Arabidopsis thaliana |
transcript | AT3G09980.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAACGAAAAGAACAGGGAGAAGGTGCAGCTAATCACCAGGCTAATGGAG TTGGTGGGGGAAAGCGAAAAGATGAGAATGAAGAAGCTGGAAGAGEST: gi|125275987|gb|EL290072.1|EL290072
genomic: TCAACGAAAAGAACAGGGAGAAGGTGCAGCTAATCACCAGGCTAATGGAGgttagtcaac ... tgattcgcagTTGGTGGGAGAAAGCGAAAAGATGAGAATGAAGAAGCTGGAAGAG
EST: ACCAGGCTAATGGAG TTGGTGGGAGAAAGCGAAAAGATGAGAATGAAGAAGCTGGAAGAGCTAAGCEST: gi|125203352|gb|EL218306.1|EL218306
genomic: ACCAGGCTAATGGAGgttagtcaac ... tgattcgcagTTGGTGGGAGAAAGCGAAAAGATGAGAATGAAGAAGCTGGAAGAGCTAAGC
EST: TCAACGAAAAGAACAGGGAGAAGGTGCAGCTAATCACCAGGCTAATGGAG TTGGTGGGGGAAAGCGAAAAGAT
genomic: TCAACGAAAAGAACAGGGAGAAGGTGCAGCTAATCACCAGGCTAATGGAGgttagtcaac ... tgattcgcagTTGGTGGGAGAAAGCGAAAAGAT
tcttaacttgaattgcgttcttgacttaacggtttccgattcgaatgattcgcagTTGGTGGGAGAAAGCGAAAAGATGAGAATGAAGAAGCTGGAAGAGCTAAGCAAGAACATAGATTCTATACACTGACTTTGAATCCAAGACAGTACAAGAA
ttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtccactctgatctgtgtcgaatatattcattttgttatgtgttcttaacttgaattgcgttcttgacttaacggtttccgattcgaatgattcgcagTTGGTGGGAGAAAGCGAAAAGATGAGAATGAAGAAGCTGGAAGAGCTAAGCAAGAACATAGATTCTATACACTGACTTTGAATCCAAGACAGTACAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - ccactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acttaac