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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGCTGATCCCATGAGGAAAGAAGTTGCTATGGTTAGGAAGAAGATTGATTCTGTCAACAAAGAATTAAAGCCATTGGGCCATACAGTTCAGAAAAAGgtaaggctaaaacataatcaaatccattgacctgtgtttaaaatatgttttgttgaggattcagatgctaagctggtttatttacgcaacttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G09980.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164178951|gb|ES129480.1|ES129480
EST:     ATTCTGTCAACAAAGAATTAAAGCCATTGGGC-ATACAGT-CAGAAAAAG                         GAACGAGAGTACAAAGAAGCT
genomic: ATTCTGTCAACAAAGAATTAAAGCCATTGGGCCATACAGTTCAGAAAAAGgtaaggctaa ... caacttgcagGAACGAGAGTACAAAGAAGCT
EST: gi|164065276|gb|ES061752.1|ES061752
EST:     TTCTGTCAACAAAGAATTAAAGCCATTGGGCCAATACAGTTCAGAAAAAG                         G-ACGAGAGTACAAAGAAGCTCTTGAAGCATTCAACGAAAAGAACAGGGAG
genomic: TTCTGTCAACAAAGAATTAAAGCCATTGGGCC-ATACAGTTCAGAAAAAGgtaaggctaa ... caacttgcagGAACGAGAGTACAAAGAAGCTCTTGAAGCATTCAACGAAAAGAACAGGGAG
EST: gi|164006385|gb|ES139551.1|ES139551
EST:     ATTCTGTCAACAAAGAATTAAAGCCATTGGGCCATACAGTTCAGAAAAAG                         GAACGAGAGTACAAAGAAGCTC
genomic: ATTCTGTCAACAAAGAATTAAAGCCATTGGGCCATACAGTTCAGAAAAAGgtaaggctaa ... caacttgcagGAACGAGAGTACAAAGAAGCTC
EST: gi|164047852|gb|ES089072.1|ES089072
EST:     ATTCTGTCAACAAAGAATTAAAGCCATTGGGCCATACAGTTCAGAAAAAG                         GAACGAGAGTACAAAGAAGCT
genomic: ATTCTGTCAACAAAGAATTAAAGCCATTGGGCCATACAGTTCAGAAAAAGgtaaggctaa ... caacttgcagGAACGAGAGTACAAAGAAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTAGCTGATCCCATGAGGAAAGAAGTTGCTATGGTTAGGAAGAAGATTGATTCTGTCAACAAAGAATTAAAGCCATTGGGCCATACAGTTCAGAAAAAGgtaaggctaaaacataatcaaatccattgacctgtgtttaaaatatgttttgttgaggattcagatgctaagctggtttatttacgcaacttgcag

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