1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaggctaaaacataatcaaatccattgacctgtgtttaaaatatgttttgttgaggattcagatgctaagctggtttatttacgcaacttgcagGAACGAGAGTACAAAGAAGCTCTTGAAGCATTCAACGAAAAGAACAGGGAGAAGGTGCAGCTAATCACCAGGCTAATGGAG
species | Arabidopsis thaliana |
transcript | AT3G09980.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTCTGTCAACAAAGAATTAAAGCCATTGGGC-ATACAGT-CAGAAAAAG GAACGAGAGTACAAAGAAGCTEST: gi|164065276|gb|ES061752.1|ES061752
genomic: ATTCTGTCAACAAAGAATTAAAGCCATTGGGCCATACAGTTCAGAAAAAGgtaaggctaa ... caacttgcagGAACGAGAGTACAAAGAAGCT
EST: TTCTGTCAACAAAGAATTAAAGCCATTGGGCCAATACAGTTCAGAAAAAG G-ACGAGAGTACAAAGAAGCTCTTGAAGCATTCAACGAAAAGAACAGGGAGEST: gi|164006385|gb|ES139551.1|ES139551
genomic: TTCTGTCAACAAAGAATTAAAGCCATTGGGCC-ATACAGTTCAGAAAAAGgtaaggctaa ... caacttgcagGAACGAGAGTACAAAGAAGCTCTTGAAGCATTCAACGAAAAGAACAGGGAG
EST: ATTCTGTCAACAAAGAATTAAAGCCATTGGGCCATACAGTTCAGAAAAAG GAACGAGAGTACAAAGAAGCTCEST: gi|164047852|gb|ES089072.1|ES089072
genomic: ATTCTGTCAACAAAGAATTAAAGCCATTGGGCCATACAGTTCAGAAAAAGgtaaggctaa ... caacttgcagGAACGAGAGTACAAAGAAGCTC
EST: ATTCTGTCAACAAAGAATTAAAGCCATTGGGCCATACAGTTCAGAAAAAG GAACGAGAGTACAAAGAAGCT
genomic: ATTCTGTCAACAAAGAATTAAAGCCATTGGGCCATACAGTTCAGAAAAAGgtaaggctaa ... caacttgcagGAACGAGAGTACAAAGAAGCT
aatatgttttgttgaggattcagatgctaagctggtttatttacgcaacttgcagGAACGAGAGTACAAAGAAGCTCTTGAAGCATTCAACGAAAAGAACAGGGAGAAGGTGCAGCTAATCACCAGGCTAATGGAG
tttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggctaaaacataatcaaatccattgacctgtgtttaaaatatgttttgttgaggattcagatgctaagctggtttatttacgcaacttgcagGAACGAGAGTACAAAGAAGCTCTTGAAGCATTCAACGAAAAGAACAGGGAGAAGGTGCAGCTAATCACCAGGCTAATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT