Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGTATTTGCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagtttgtgtatctctactcctaccattttaacacaaattatgttactatcttagccaattttgtgtgttaacgcgagcgatattgatgctgtggaaattag

Basic information

species Arabidopsis thaliana
transcript AT3G08690.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125299573|gb|EL313658.1|EL313658
EST:     CTCTTACTATCTCTAAG                         GTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATTCT
genomic: CTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCT
EST: gi|116447434|gb|EG490026.1|EG490026
EST:     GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAG                         GTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCT
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCT
EST: gi|164216648|gb|ES088214.1|ES088214
EST:     GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAG                         GTTCTGTTGTCGATTTGCTCGCTGTTGAC
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGAC
EST: gi|124783418|gb|EH873262.1|EH873262
EST:     GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAG                         GTTCTGTTGTCGATTTG
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTG
EST: gi|19741608|gb|AU226961.1|AU226961
EST:     GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAG                         GTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCT
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCT
EST: gi|124838580|gb|EH923019.1|EH923019
EST:     GCCTTGATATTTTGAA-GAGCAATGGAGCCCTGCTCTTACTATCTCTAAG                         GTTCTGTTGTC
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGTATTTGCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagtttgtgtatctctactcctaccattttaacacaaattatgttactatcttagccaattttgtgtgttaacgcgagcgatattgatgctgtggaaattag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA