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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGCCACTATCATGGGACCTCCTGAAAGTCCGTATGCCGGAGGAGTGTTTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgttgtgttatgagactctttatgattcatcggtttttatcattgatcttatgatgtgaatccatcgatcttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G08690.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116447434|gb|EG490026.1|EG490026
EST:     GGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAG                         GTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
genomic: GGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgtt ... gatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
EST: gi|19741608|gb|AU226961.1|AU226961
EST:     ATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAG                         GTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
genomic: ATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgtt ... gatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT