1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatgtgttgtgttatgagactctttatgattcatcggtttttatcattgatcttatgatgtgaatccatcgatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGTATTTGCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCT
species | Arabidopsis thaliana |
transcript | AT3G08690.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAG GTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGTEST: gi|19741608|gb|AU226961.1|AU226961
genomic: GGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgtt ... gatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
EST: ATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAG GTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
genomic: ATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgtt ... gatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
atgattcatcggtttttatcattgatcttatgatgtgaatccatcgatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGTATTTGCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCT
cattgat putative branch site (score: 4)
tttttatcattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtgttgtgttatgagactctttatgattcatcggtttttatcattgatcttatgatgtgaatccatcgatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGTATTTGCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA