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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctatatataaaaggaatcatgacttgttctttccatgttatctctaagaatgtttgtgtttgatattggttggtaatgttattagTGAAACCGAAGAAAGGGAATGCTCTGTTGTTCTTCAACCTCCAACAAGACGCAATCCCAGACCCCTTTAGCCTTCACGGAGGTTGTCCAGTGATCGAAGG

Basic information

species Arabidopsis thaliana
transcript AT3G06300.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125252411|gb|EL266496.1|EL266496
EST:     AGAATAAAGACGATCTTTCTGATTGTGCAAAGAAAGGAATCGCTG                         TGAAACCGAAGAAAGGGAATGCTCTGTTGTTCTTCAACCTCCAACAAGACG
genomic: AGAATAAAGACGATCTTTCTGATTGTGCAAAGAAAGGAATCGCTGgtgagctata ... atgttattagTGAAACCGAAGAAAGGGAATGCTCTGTTGTTCTTCAACCTCCAACAAGACG
EST: gi|86082707|gb|DR378466.1|DR378466
EST:     TTCTGAGAATAAAGACGATCTTTCTGATTGTGCAAAGAAAGGAATCGCTG                         TGAAACCGAAGAAAGGGAATGCTCTGTTGTTCTTCAACCTCCAACAAGACG
genomic: TTCTGAGAATAAAGACGATCTTTCTGATTGTGCAAAGAAAGGAATCGCTGgtgagctata ... atgttattagTGAAACCGAAGAAAGGGAATGCTCTGTTGTTCTTCAACCTCCAACAAGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccatgttatctctaagaatgtttgtgtttgatattggttggtaatgttattagTGAAACCGAAGAAAGGGAATGCTCTGTTGTTCTTCAACCTCCAACAAGACGCAATCCCAGACCCCTTTAGCCTTCACGGAGGTTGTCCAGTGATCGAAGG
                           gtttgat  putative branch site (score: 5)
                                           taatgttatta  TA-rich tract