1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGAGAATCTGCAGAGATCTGCGGTTGCTGATAACGATAATGGCGAGAGTCAAGTCAGTGATGTTCGTACCAGCTCCGGCACTTTTATCTCCAAAGGAAAGgtgcaattttaattcggcacatcagatctcattgaatggcttgattggaattgatcttgattctaatttatgacactcgacctcaagaactctgaatctc...
species | Arabidopsis thaliana |
transcript | AT3G06300.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCAGTGATGTTCGTACCAGCTCCGGCACTTTTATCTCCAAAGGAAAG GATCCTATTGTTTCCGGTATCGAGGACAAGCTCTCAACATGGACATTTCTCEST: gi|19876916|gb|AU237747.1|AU237747
genomic: TCAGTGATGTTCGTACCAGCTCCGGCACTTTTATCTCCAAAGGAAAGgtgcaatttt ... ttaatgacagGATCCTATTGTTTCCGGTATCGAGGACAAGCTCTCAACATGGACATTTCTC
EST: AAGTCAGTGATGTTCGTACCAGCTCCGGCACTTTTATCTCCAAAGGAAAG GATCCTATTGTTTCCGGTATCGAGGACAAGCTCTCAACATGGACATTTCTCEST: gi|124764586|gb|EH854716.1|EH854716
genomic: AAGTCAGTGATGTTCGTACCAGCTCCGGCACTTTTATCTCCAAAGGAAAGgtgcaatttt ... ttaatgacagGATCCTATTGTTTCCGGTATCGAGGACAAGCTCTCAACATGGACATTTCTC
EST: CTTTTATCTCCAAAGGAAAG GATCCTATTGTTTCCGGTATCGAGGACAAGCTCTCAACATGGACATTTCTC
genomic: CTTTTATCTCCAAAGGAAAGgtgcaatttt ... ttaatgacagGATCCTATTGTTTCCGGTATCGAGGACAAGCTCTCAACATGGACATTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGAATCTGCAGAGATCTGCGGTTGCTGATAACGATAATGGCGAGAGTCAAGTCAGTGATGTTCGTACCAGCTCCGGCACTTTTATCTCCAAAGGAAAGgtgcaattttaattcggcacatcagatctcattgaatggcttgattggaattgatcttgattctaatttatgacactcgacctcaagaactctgaatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcgacctc