1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATCCTATTGTTTCCGGTATCGAGGACAAGCTCTCAACATGGACATTTCTCCCAAAAGgtaactttaacaatctgaatggtttttcaatagtggtctctctgtttcacaatgtcaattgacaaggaaccttaactgttgttgagtttcttgaaagggtttttcagaagatattattgtttcctaagttcttcactttgtggtcacag
species | Arabidopsis thaliana |
transcript | AT3G06300.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACAAGCTCTCAACATGGACATTTCTCCCAAAAG AAAACGGGGAAGACCTTCAGGTATTGAGATATGAGCACGGTCAGAAATATGEST: gi|19876916|gb|AU237747.1|AU237747
genomic: ACAAGCTCTCAACATGGACATTTCTCCCAAAAGgtaactttaa ... gtggtcacagAAAACGGGGAAGACCTTCAGGTATTGAGATATGAGCACGGTCAGAAATATG
EST: TGTTTCCGGTATCGAGGACAAGCTCTCAACATGGACATTTCTCCCAAAAG AAAACGGGGAAGACCTTCAGGTATTGAGATATGAGCACGGTCAGAAATATG
genomic: TGTTTCCGGTATCGAGGACAAGCTCTCAACATGGACATTTCTCCCAAAAGgtaactttaa ... gtggtcacagAAAACGGGGAAGACCTTCAGGTATTGAGATATGAGCACGGTCAGAAATATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCCTATTGTTTCCGGTATCGAGGACAAGCTCTCAACATGGACATTTCTCCCAAAAGgtaactttaacaatctgaatggtttttcaatagtggtctctctgtttcacaatgtcaattgacaaggaaccttaactgttgttgagtttcttgaaagggtttttcagaagatattattgtttcctaagttcttcactttgtggtcacag
- - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - CATGGA